Variant report

Variant	rs7988111
Chromosome Location	chr13:53661280-53661281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12100307	0.83[AMR][1000 genomes]
rs55789421	0.93[AMR][1000 genomes]
rs56114342	0.93[AMR][1000 genomes]
rs56983824	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs57694479	0.87[AMR][1000 genomes]
rs57736323	0.87[AMR][1000 genomes]
rs58606612	0.93[AMR][1000 genomes]
rs60146847	0.87[AMR][1000 genomes]
rs60174455	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60604014	0.93[AMR][1000 genomes]
rs7326595	0.93[AMR][1000 genomes]
rs73480913	0.86[AMR][1000 genomes]
rs73480941	1.00[AMR][1000 genomes]
rs73480958	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73483509	0.93[AMR][1000 genomes]
rs74086440	1.00[AMR][1000 genomes]
rs74086712	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs74086719	0.93[AMR][1000 genomes]
rs74086727	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs74086733	0.93[AMR][1000 genomes]
rs74086787	0.87[AMR][1000 genomes]
rs74086791	0.87[AMR][1000 genomes]
rs74090317	0.83[AMR][1000 genomes]
rs74090320	0.83[AMR][1000 genomes]
rs74090326	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090335	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090344	0.93[AMR][1000 genomes]
rs74090352	0.93[AMR][1000 genomes]
rs7991958	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7995056	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53658600-53666000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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