Variant report

Variant	rs74086719
Chromosome Location	chr13:53742246-53742247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55789421	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56114342	1.00[AMR][1000 genomes]
rs56983824	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57694479	0.93[AMR][1000 genomes]
rs57736323	0.93[AMR][1000 genomes]
rs58606612	0.87[AMR][1000 genomes]
rs60146847	0.93[AMR][1000 genomes]
rs60174455	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs60604014	0.87[AMR][1000 genomes]
rs7326595	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480941	0.93[AMR][1000 genomes]
rs73480958	0.93[AMR][1000 genomes]
rs73483509	1.00[AMR][1000 genomes]
rs74086440	0.93[AMR][1000 genomes]
rs74086712	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086727	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086733	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086787	0.93[AMR][1000 genomes]
rs74086791	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs74090326	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs74090335	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs74090344	0.87[AMR][1000 genomes]
rs74090352	0.87[AMR][1000 genomes]
rs7988111	0.93[AMR][1000 genomes]
rs7991958	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7995056	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53739800-53743800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr13:53740400-53745000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:53741000-53743400	Enhancers	Placenta Amnion	Placenta Amnion
4	chr13:53741600-53743200	Enhancers	Brain Germinal Matrix	brain
5	chr13:53742000-53743600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr13:53742200-53743400	Weak transcription	Fetal Brain Male	brain
7	chr13:53742200-53743400	Weak transcription	Ovary	ovary
8	chr13:53742200-53745000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr13:53742200-53745400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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