Variant report

Variant	rs60176984
Chromosome Location	chr8:122811539-122811540
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:122811003..122812601-chr8:122822806..122825408,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10088185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10110191	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10112095	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1030977	0.97[AFR][1000 genomes]
rs1030978	0.97[AFR][1000 genomes]
rs1030979	0.97[AFR][1000 genomes]
rs13251300	0.95[AFR][1000 genomes]
rs1371715	0.95[AFR][1000 genomes]
rs1371716	0.97[AFR][1000 genomes]
rs16896149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16896151	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16896176	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16896185	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6991056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6995066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73326803	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7814424	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7844994	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs964868	0.97[AFR][1000 genomes]
rs964869	0.97[AFR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122806800-122812600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:122809200-122812200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:122809400-122811600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:122809400-122811600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:122809400-122811800	Weak transcription	NHLF	lung
6	chr8:122809400-122813800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr8:122809800-122811600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:122809800-122812000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:122809800-122812200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr8:122809800-122813400	Enhancers	Fetal Lung	lung
11	chr8:122809800-122813600	Weak transcription	Small Intestine	intestine
12	chr8:122809800-122815400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr8:122809800-122818400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:122810000-122811600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:122810000-122811800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr8:122810000-122812000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr8:122810000-122812600	Weak transcription	NHDF-Ad	bronchial
18	chr8:122810000-122812800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr8:122810200-122811800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr8:122810800-122812200	Enhancers	HSMM	muscle
21	chr8:122811200-122811800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr8:122811200-122811800	Enhancers	Muscle Satellite Cultured Cells	--
23	chr8:122811400-122811600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links