Variant report

Variant	rs1371716
Chromosome Location	chr8:122815336-122815337
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:122814370..122817062-chr8:122820839..122823793,2	MCF-7	breast:
2	chr8:122814089..122816571-chr8:122818088..122819842,2	MCF-7	breast:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10086515	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10086612	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10088185	0.97[AFR][1000 genomes]
rs10094028	0.86[ASN][1000 genomes]
rs10094891	0.81[EUR][1000 genomes]
rs10095392	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10101375	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10101403	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10101470	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10104333	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10104585	0.97[EUR][1000 genomes]
rs10104809	0.86[ASN][1000 genomes]
rs10105318	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10108701	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10108705	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10110100	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10110106	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10110134	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10110191	0.99[AFR][1000 genomes]
rs10110297	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10112095	0.99[AFR][1000 genomes]
rs1030977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1030978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1030979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956058	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10956062	0.86[ASN][1000 genomes]
rs11990026	0.86[ASN][1000 genomes]
rs12676842	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13251152	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13251300	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13261004	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13263521	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1371715	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1371717	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1371718	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1371719	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16896149	0.97[AFR][1000 genomes]
rs16896151	0.97[AFR][1000 genomes]
rs16896176	0.99[AFR][1000 genomes]
rs16896185	0.99[AFR][1000 genomes]
rs4128641	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4242327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4242328	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4268133	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4317573	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4327868	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4413781	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4431601	0.86[ASN][1000 genomes]
rs4433151	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4464973	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4518675	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4520174	0.88[EUR][1000 genomes]
rs4529469	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4537307	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4567046	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4582571	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4582572	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4609198	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4641072	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4645569	0.97[EUR][1000 genomes]
rs4871212	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60176984	0.97[AFR][1000 genomes]
rs6470041	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470047	0.86[ASN][1000 genomes]
rs6980644	0.81[EUR][1000 genomes]
rs6984179	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6991056	0.97[AFR][1000 genomes]
rs6995066	0.97[AFR][1000 genomes]
rs6999640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6999793	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7001379	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7001394	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7001741	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7002399	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7002779	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7003107	0.86[ASN][1000 genomes]
rs7003690	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003896	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7004948	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7009055	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7012540	1.00[CHB][hapmap]
rs73326803	0.99[AFR][1000 genomes]
rs7814424	0.99[AFR][1000 genomes]
rs7822873	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7844994	0.99[AFR][1000 genomes]
rs9297655	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs964868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122809800-122815400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:122809800-122818400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:122812200-122815400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:122812200-122815800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:122812400-122815400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr8:122812600-122815600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr8:122812600-122815600	Enhancers	Placenta	Placenta
8	chr8:122812800-122815400	Enhancers	HSMM	muscle
9	chr8:122812800-122815600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr8:122812800-122815800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr8:122812800-122818800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:122813200-122815400	Weak transcription	Fetal Intestine Small	intestine
13	chr8:122814000-122818400	Weak transcription	Osteobl	bone
14	chr8:122814200-122815400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:122814200-122815400	Weak transcription	NHDF-Ad	bronchial
16	chr8:122814200-122815600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr8:122814200-122815600	Weak transcription	Esophagus	oesophagus
18	chr8:122814200-122815600	Weak transcription	Small Intestine	intestine
19	chr8:122814200-122815600	Weak transcription	NHLF	lung
20	chr8:122814200-122816000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr8:122814200-122819000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:122814400-122815400	Weak transcription	NHEK	skin
23	chr8:122814400-122815600	Weak transcription	Hela-S3	cervix
24	chr8:122814400-122818200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr8:122814600-122815600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr8:122814600-122815600	Weak transcription	Fetal Lung	lung
27	chr8:122814600-122817000	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr8:122814800-122815800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr8:122815000-122815400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr8:122815000-122817200	Enhancers	Stomach Mucosa	stomach
31	chr8:122815200-122816200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr8:122815200-122816800	Enhancers	Fetal Intestine Large	intestine

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