Variant report

Variant	rs12676842
Chromosome Location	chr8:122827088-122827089
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:122809810..122811321-chr8:122826835..122828977,2	MCF-7	breast:
2	chr8:122826116..122828685-chr8:122832053..122833673,2	MCF-7	breast:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10086515	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10086612	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10094028	1.00[ASN][1000 genomes]
rs10094891	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10095392	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10101375	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10101403	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10101470	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104333	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104585	1.00[EUR][1000 genomes]
rs10104809	1.00[ASN][1000 genomes]
rs10105318	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108701	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108705	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110100	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110106	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110134	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110297	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1030977	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1030978	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1030979	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10956058	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956062	1.00[ASN][1000 genomes]
rs11781753	0.86[ASN][1000 genomes]
rs11990026	1.00[ASN][1000 genomes]
rs13251152	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13251300	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13261004	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13263521	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1371715	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1371716	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1371717	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1371718	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1371719	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs279627	0.81[EUR][1000 genomes]
rs279637	0.81[EUR][1000 genomes]
rs279638	0.81[EUR][1000 genomes]
rs279639	0.81[EUR][1000 genomes]
rs4128641	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4242327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4242328	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4268133	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4317573	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4327868	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4413781	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4431601	1.00[ASN][1000 genomes]
rs4433151	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4464973	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4518675	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4520174	0.91[EUR][1000 genomes]
rs4529469	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4537307	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4567046	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4582571	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4582572	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4609198	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4641072	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4645569	1.00[EUR][1000 genomes]
rs4871212	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470041	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6470047	1.00[ASN][1000 genomes]
rs6980644	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6984179	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999793	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001379	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001394	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001741	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7002399	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7002779	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003107	1.00[ASN][1000 genomes]
rs7003690	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7003896	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7004948	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009055	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7012540	1.00[CHB][hapmap]
rs7822873	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297655	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964868	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs964869	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122816400-122830600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:122824800-122829800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:122826400-122827400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:122826400-122827800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr8:122826600-122827200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:122826600-122827200	Active TSS	Brain Angular Gyrus	brain
7	chr8:122826600-122827200	Active TSS	Brain Cingulate Gyrus	brain
8	chr8:122826600-122827200	Active TSS	Brain Hippocampus Middle	brain
9	chr8:122826600-122827200	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr8:122827000-122827200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:122827000-122827200	Flanking Active TSS	Brain Anterior Caudate	brain
12	chr8:122827000-122827200	Flanking Active TSS	Brain Substantia Nigra	brain
13	chr8:122827000-122831000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links