Variant report

Variant	rs6470041
Chromosome Location	chr8:122816002-122816003
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:122814370..122817062-chr8:122820839..122823793,2	MCF-7	breast:
2	chr8:122814089..122816571-chr8:122818088..122819842,2	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10086515	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10086612	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10094028	0.86[ASN][1000 genomes]
rs10094891	0.83[EUR][1000 genomes]
rs10095392	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10101375	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10101403	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10101470	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10104333	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10104585	1.00[EUR][1000 genomes]
rs10104809	0.86[ASN][1000 genomes]
rs10105318	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10108701	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10108705	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10110100	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10110106	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10110134	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10110297	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1030977	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1030978	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1030979	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956058	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10956062	0.86[ASN][1000 genomes]
rs11990026	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12676842	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13251152	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13251300	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13261004	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13263521	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1371715	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1371716	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1371717	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1371718	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1371719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs279627	0.81[EUR][1000 genomes]
rs279637	0.81[EUR][1000 genomes]
rs279638	0.81[EUR][1000 genomes]
rs279639	0.81[EUR][1000 genomes]
rs4128641	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4242327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4242328	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4268133	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4317573	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4327868	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4413781	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4431601	0.86[ASN][1000 genomes]
rs4433151	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4464973	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4518675	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4520174	0.91[EUR][1000 genomes]
rs4529469	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4537307	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4567046	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4582571	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4582572	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4609198	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4641072	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4645569	1.00[EUR][1000 genomes]
rs4871212	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6470047	0.86[ASN][1000 genomes]
rs6980644	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6984179	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6999640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6999793	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7001379	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7001394	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7001741	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7002399	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7002779	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7003107	0.86[ASN][1000 genomes]
rs7003690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003896	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7004948	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7009055	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7012540	1.00[CHB][hapmap]
rs7822873	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9297655	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs964868	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964869	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122809800-122818400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:122812800-122818800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:122814000-122818400	Weak transcription	Osteobl	bone
4	chr8:122814200-122819000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:122814400-122818200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr8:122814600-122817000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr8:122815000-122817200	Enhancers	Stomach Mucosa	stomach
8	chr8:122815200-122816200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:122815200-122816800	Enhancers	Fetal Intestine Large	intestine
10	chr8:122815400-122816200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:122815400-122816200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:122815400-122816200	Enhancers	NHDF-Ad	bronchial
13	chr8:122815400-122816200	Enhancers	NHEK	skin
14	chr8:122815400-122816400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr8:122815400-122818200	Weak transcription	HSMM	muscle
16	chr8:122815600-122816200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:122815600-122816200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:122815600-122816200	Flanking Active TSS	Placenta	Placenta
19	chr8:122815600-122816200	Enhancers	Placenta Amnion	Placenta Amnion
20	chr8:122815600-122816200	Enhancers	Hela-S3	cervix
21	chr8:122815800-122816200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr8:122815800-122816200	Enhancers	Right Atrium	heart
23	chr8:122816000-122816200	Enhancers	Adipose Nuclei	Adipose
24	chr8:122816000-122816200	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr8:122816000-122817000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr8:122816000-122818600	Weak transcription	NHLF	lung
27	chr8:122816000-122819800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links