Variant report

Variant	rs10108701
Chromosome Location	chr8:122871164-122871165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10086515	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10086612	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10094028	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10094891	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10095392	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10101375	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10101403	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10101470	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104333	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104585	0.85[EUR][1000 genomes]
rs10104809	1.00[ASN][1000 genomes]
rs10105318	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108705	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110100	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110106	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110134	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110297	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1030977	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1030978	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1030979	0.86[ASN][1000 genomes]
rs10956058	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956062	1.00[ASN][1000 genomes]
rs11781753	0.86[ASN][1000 genomes]
rs11990026	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12676842	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13251152	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13251300	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13261004	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13263521	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1371715	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1371716	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1371717	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1371718	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1371719	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4128641	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4242327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4242328	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4268133	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4317573	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4327868	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4413781	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4431601	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4433151	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4464973	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4518675	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4520174	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4529469	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4537307	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4567046	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4582571	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4582572	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4609198	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4641072	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4645569	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4871212	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470041	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6470047	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999793	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7001379	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001394	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001741	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7002399	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7002779	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003107	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003690	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7003896	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7004948	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009055	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7012540	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7822873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964868	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs964869	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752207	chr8:122869651-122961848	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122869400-122873600	Enhancers	Fetal Lung	lung
2	chr8:122869600-122871600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:122870200-122871200	Enhancers	Fetal Stomach	stomach
4	chr8:122870400-122871200	Enhancers	Liver	Liver
5	chr8:122870400-122871400	Enhancers	Fetal Kidney	kidney
6	chr8:122870600-122881800	Weak transcription	NHDF-Ad	bronchial
7	chr8:122871000-122871600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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