Variant report

Variant	rs7003690
Chromosome Location	chr8:122821533-122821534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:122814370..122817062-chr8:122820839..122823793,2	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10086515	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10086612	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10094028	0.86[ASN][1000 genomes]
rs10094891	0.83[EUR][1000 genomes]
rs10095392	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10101375	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10101403	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10101470	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10104333	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10104585	1.00[EUR][1000 genomes]
rs10104809	0.86[ASN][1000 genomes]
rs10105318	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10108701	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10108705	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10110100	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10110106	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10110134	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10110297	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1030977	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1030978	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1030979	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956058	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10956062	0.86[ASN][1000 genomes]
rs11990026	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12676842	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13251152	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13251300	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13261004	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13263521	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1371715	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1371716	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1371717	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1371718	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1371719	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs279627	0.81[EUR][1000 genomes]
rs279637	0.81[EUR][1000 genomes]
rs279638	0.81[EUR][1000 genomes]
rs279639	0.81[EUR][1000 genomes]
rs4128641	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4242327	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4242328	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4268133	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4317573	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4327868	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4413781	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4431601	0.86[ASN][1000 genomes]
rs4433151	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4464973	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4518675	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4520174	0.91[EUR][1000 genomes]
rs4529469	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4537307	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4567046	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4582571	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4582572	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4609198	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4641072	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4645569	1.00[EUR][1000 genomes]
rs4871212	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6470041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470047	0.86[ASN][1000 genomes]
rs6980644	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6984179	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6999640	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6999793	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7001379	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7001394	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7001741	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7002399	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7002779	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7003107	0.86[ASN][1000 genomes]
rs7003896	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7004948	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7009055	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7822873	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9297655	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs964868	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964869	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122816200-122823600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr8:122816400-122830600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:122817200-122823800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr8:122819400-122824000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:122819600-122823400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:122819600-122823600	Weak transcription	HMEC	breast
7	chr8:122819600-122823800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:122819800-122822200	Weak transcription	NHLF	lung
9	chr8:122820000-122822000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:122820000-122822400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr8:122820000-122823600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:122820200-122823600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:122820200-122823600	Weak transcription	NH-A	brain
14	chr8:122820400-122821800	Weak transcription	Osteobl	bone
15	chr8:122820400-122822200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr8:122820400-122822200	Weak transcription	HSMM	muscle
17	chr8:122820400-122823400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:122820400-122823400	Weak transcription	HSMMtube	muscle
19	chr8:122820400-122823600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr8:122820600-122821800	Weak transcription	NHDF-Ad	bronchial

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