Variant report

Variant	rs1371718
Chromosome Location	chr8:122818932-122818933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:122814089..122816571-chr8:122818088..122819842,2	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10086515	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10086612	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10094028	0.86[ASN][1000 genomes]
rs10094891	0.81[EUR][1000 genomes]
rs10095392	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10101375	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10101403	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10101470	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10104333	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10104585	0.97[EUR][1000 genomes]
rs10104809	0.86[ASN][1000 genomes]
rs10105318	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10108701	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10108705	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10110100	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10110106	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10110134	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10110297	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1030977	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1030978	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1030979	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956058	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10956062	0.86[ASN][1000 genomes]
rs11990026	0.86[ASN][1000 genomes]
rs12676842	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13251152	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13251300	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13261004	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13263521	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1371715	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1371716	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1371717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1371719	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4128641	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4242327	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4242328	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4268133	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4317573	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4327868	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4413781	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4431601	0.86[ASN][1000 genomes]
rs4433151	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4464973	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4518675	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4520174	0.88[EUR][1000 genomes]
rs4529469	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4537307	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4567046	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4582571	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4582572	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4609198	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4641072	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4645569	0.97[EUR][1000 genomes]
rs4871212	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6470041	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470047	0.86[ASN][1000 genomes]
rs6980644	0.81[EUR][1000 genomes]
rs6984179	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6999640	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6999793	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7001379	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7001394	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7001741	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7002399	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7002779	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7003107	0.86[ASN][1000 genomes]
rs7003690	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003896	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7004948	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7009055	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7012540	1.00[CHB][hapmap]
rs7822873	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9297654	0.86[AFR][1000 genomes]
rs9297655	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs964868	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964869	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122814200-122819000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:122816000-122819800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:122816200-122819200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:122816200-122823600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:122816400-122830600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:122816800-122819200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:122817200-122823800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr8:122818200-122819200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:122818200-122819600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:122818200-122820400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:122818200-122820400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr8:122818200-122820400	Enhancers	HSMM	muscle
13	chr8:122818200-122820600	Enhancers	NHDF-Ad	bronchial
14	chr8:122818400-122820400	Enhancers	Osteobl	bone
15	chr8:122818600-122819000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:122818600-122819200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr8:122818600-122819800	Enhancers	NHLF	lung
18	chr8:122818600-122820400	Enhancers	HSMMtube	muscle
19	chr8:122818800-122820400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links