Variant report

Variant	rs7002399
Chromosome Location	chr8:122829923-122829924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:122829305..122831383-chr8:122833553..122836213,3	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10086515	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10086612	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10094028	1.00[ASN][1000 genomes]
rs10094891	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10095392	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10101375	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10101403	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10101470	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104333	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104585	1.00[EUR][1000 genomes]
rs10104809	1.00[ASN][1000 genomes]
rs10105318	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108701	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108705	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110100	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110106	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110134	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110297	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1030977	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1030978	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1030979	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10956058	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956062	1.00[ASN][1000 genomes]
rs11781753	0.86[ASN][1000 genomes]
rs11990026	1.00[ASN][1000 genomes]
rs12676842	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13251152	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13251300	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13261004	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13263521	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1371715	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1371716	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1371717	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1371718	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1371719	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs279627	0.81[EUR][1000 genomes]
rs279637	0.81[EUR][1000 genomes]
rs279638	0.81[EUR][1000 genomes]
rs279639	0.81[EUR][1000 genomes]
rs4128641	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4242327	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4242328	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4268133	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4317573	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4327868	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4413781	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4431601	1.00[ASN][1000 genomes]
rs4433151	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4464973	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4518675	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4520174	0.91[EUR][1000 genomes]
rs4529469	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4537307	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4567046	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4582571	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4582572	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4609198	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4641072	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4645569	1.00[EUR][1000 genomes]
rs4871212	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470041	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6470047	1.00[ASN][1000 genomes]
rs6980644	0.84[EUR][1000 genomes]
rs6984179	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999640	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999793	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001379	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001394	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001741	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7002779	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003107	1.00[ASN][1000 genomes]
rs7003690	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7003896	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7004948	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009055	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7822873	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297655	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964868	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs964869	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122816400-122830600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:122827000-122831000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:122829200-122836000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:122829600-122830000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:122829600-122830600	Enhancers	HMEC	breast
6	chr8:122829600-122834000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:122829800-122830000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
8	chr8:122829800-122830200	Enhancers	NHEK	skin
9	chr8:122829800-122830400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:122829800-122830800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr8:122829800-122832600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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