Variant report

Variant	rs16896151
Chromosome Location	chr8:122813203-122813204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:122805215..122808178-chr8:122812911..122815286,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10088185	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10090678	1.00[EUR][1000 genomes]
rs10101781	1.00[EUR][1000 genomes]
rs10110191	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10112095	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1030977	0.97[AFR][1000 genomes]
rs1030978	0.97[AFR][1000 genomes]
rs1030979	0.97[AFR][1000 genomes]
rs13251300	0.95[AFR][1000 genomes]
rs1371715	0.95[AFR][1000 genomes]
rs1371716	0.97[AFR][1000 genomes]
rs16896149	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16896176	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16896185	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28533790	1.00[EUR][1000 genomes]
rs59736483	1.00[EUR][1000 genomes]
rs60176984	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6991056	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6995066	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326803	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326826	0.83[AMR][1000 genomes]
rs73328860	0.83[AMR][1000 genomes]
rs7814424	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7826213	1.00[EUR][1000 genomes]
rs7844994	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9297654	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs964868	0.97[AFR][1000 genomes]
rs964869	0.97[AFR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122809400-122813800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:122809800-122813400	Enhancers	Fetal Lung	lung
3	chr8:122809800-122813600	Weak transcription	Small Intestine	intestine
4	chr8:122809800-122815400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:122809800-122818400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:122812200-122813400	Weak transcription	Hela-S3	cervix
7	chr8:122812200-122815400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr8:122812200-122815800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:122812400-122815400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr8:122812600-122814200	Enhancers	NHLF	lung
11	chr8:122812600-122815000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr8:122812600-122815600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr8:122812600-122815600	Enhancers	Placenta	Placenta
14	chr8:122812800-122813600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:122812800-122813600	Weak transcription	NHDF-Ad	bronchial
16	chr8:122812800-122814400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr8:122812800-122815400	Enhancers	HSMM	muscle
18	chr8:122812800-122815600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr8:122812800-122815800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr8:122812800-122818800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:122813000-122813400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:122813000-122813400	Enhancers	Adipose Nuclei	Adipose
23	chr8:122813000-122813400	Weak transcription	Osteobl	bone
24	chr8:122813200-122813400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr8:122813200-122814000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr8:122813200-122814600	Enhancers	Stomach Mucosa	stomach
27	chr8:122813200-122815400	Weak transcription	Fetal Intestine Small	intestine

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