Variant report

Variant	rs7826213
Chromosome Location	chr8:122758505-122758506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10088185	1.00[EUR][1000 genomes]
rs10090678	1.00[EUR][1000 genomes]
rs10101781	1.00[EUR][1000 genomes]
rs10110191	1.00[EUR][1000 genomes]
rs10112095	1.00[EUR][1000 genomes]
rs16896149	1.00[EUR][1000 genomes]
rs16896151	1.00[EUR][1000 genomes]
rs16896176	1.00[EUR][1000 genomes]
rs16896185	1.00[EUR][1000 genomes]
rs28533790	1.00[EUR][1000 genomes]
rs59736483	1.00[EUR][1000 genomes]
rs6991056	1.00[EUR][1000 genomes]
rs6995066	1.00[EUR][1000 genomes]
rs73326803	1.00[EUR][1000 genomes]
rs7814424	1.00[EUR][1000 genomes]
rs7844994	1.00[EUR][1000 genomes]
rs9297654	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033501	chr8:122436332-122758651	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1030713	chr8:122714959-122780805	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122755600-122761400	Weak transcription	Fetal Intestine Large	intestine
2	chr8:122755800-122760400	Weak transcription	NH-A	brain
3	chr8:122755800-122760400	Weak transcription	NHLF	lung
4	chr8:122755800-122760600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:122755800-122761000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:122755800-122761200	Weak transcription	HSMMtube	muscle
7	chr8:122756000-122760400	Weak transcription	NHDF-Ad	bronchial
8	chr8:122756200-122760400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:122756200-122760600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:122756400-122760600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:122756800-122760400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:122756800-122760400	Weak transcription	HMEC	breast
13	chr8:122756800-122760400	Weak transcription	Osteobl	bone
14	chr8:122756800-122760600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:122756800-122760800	Weak transcription	Hela-S3	cervix
16	chr8:122757000-122760400	Weak transcription	HSMM	muscle
17	chr8:122757000-122760400	Weak transcription	NHEK	skin
18	chr8:122757200-122760600	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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