Variant report

Variant	rs10088185
Chromosome Location	chr8:122809669-122809670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10090678	1.00[EUR][1000 genomes]
rs10101781	1.00[EUR][1000 genomes]
rs10110191	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10112095	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1030977	0.97[AFR][1000 genomes]
rs1030978	0.97[AFR][1000 genomes]
rs1030979	0.97[AFR][1000 genomes]
rs13251300	0.95[AFR][1000 genomes]
rs1371715	0.95[AFR][1000 genomes]
rs1371716	0.97[AFR][1000 genomes]
rs16896149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16896151	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16896176	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16896185	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28533790	1.00[EUR][1000 genomes]
rs59736483	1.00[EUR][1000 genomes]
rs60176984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6991056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6995066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326803	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7814424	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7826213	1.00[EUR][1000 genomes]
rs7844994	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9297654	1.00[EUR][1000 genomes]
rs964868	0.97[AFR][1000 genomes]
rs964869	0.97[AFR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122806800-122812600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:122808200-122810000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:122808600-122809800	Enhancers	Brain Germinal Matrix	brain
4	chr8:122808800-122809800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:122809000-122809800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:122809000-122809800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:122809000-122810200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr8:122809200-122810000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr8:122809200-122812200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr8:122809400-122809800	Flanking Active TSS	Fetal Lung	lung
11	chr8:122809400-122811600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:122809400-122811600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:122809400-122811800	Weak transcription	NHLF	lung
14	chr8:122809400-122813800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr8:122809600-122809800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr8:122809600-122809800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:122809600-122809800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr8:122809600-122809800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr8:122809600-122809800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:122809600-122809800	Enhancers	Small Intestine	intestine
21	chr8:122809600-122810000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr8:122809600-122810800	Weak transcription	HSMM	muscle
23	chr8:122809600-122811200	Weak transcription	Muscle Satellite Cultured Cells	--

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