Variant report

Variant	rs16896176
Chromosome Location	chr8:122815527-122815528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:122814370..122817062-chr8:122820839..122823793,2	MCF-7	breast:
2	chr8:122814089..122816571-chr8:122818088..122819842,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10088185	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10090678	1.00[EUR][1000 genomes]
rs10101781	1.00[EUR][1000 genomes]
rs10110191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10112095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1030977	0.99[AFR][1000 genomes]
rs1030978	0.99[AFR][1000 genomes]
rs1030979	0.99[AFR][1000 genomes]
rs13251300	0.96[AFR][1000 genomes]
rs1371715	0.96[AFR][1000 genomes]
rs1371716	0.99[AFR][1000 genomes]
rs16896149	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16896151	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16896185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28533790	1.00[EUR][1000 genomes]
rs59736483	1.00[EUR][1000 genomes]
rs60176984	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6991056	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6995066	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326826	0.83[AMR][1000 genomes]
rs73328860	0.83[AMR][1000 genomes]
rs7814424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7826213	1.00[EUR][1000 genomes]
rs7844994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9297654	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs964868	0.99[AFR][1000 genomes]
rs964869	0.99[AFR][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122809800-122818400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:122812200-122815800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:122812600-122815600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr8:122812600-122815600	Enhancers	Placenta	Placenta
5	chr8:122812800-122815600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr8:122812800-122815800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:122812800-122818800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:122814000-122818400	Weak transcription	Osteobl	bone
9	chr8:122814200-122815600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:122814200-122815600	Weak transcription	Esophagus	oesophagus
11	chr8:122814200-122815600	Weak transcription	Small Intestine	intestine
12	chr8:122814200-122815600	Weak transcription	NHLF	lung
13	chr8:122814200-122816000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr8:122814200-122819000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:122814400-122815600	Weak transcription	Hela-S3	cervix
16	chr8:122814400-122818200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr8:122814600-122815600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:122814600-122815600	Weak transcription	Fetal Lung	lung
19	chr8:122814600-122817000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr8:122814800-122815800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr8:122815000-122817200	Enhancers	Stomach Mucosa	stomach
22	chr8:122815200-122816200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr8:122815200-122816800	Enhancers	Fetal Intestine Large	intestine
24	chr8:122815400-122815800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr8:122815400-122815800	Enhancers	Adipose Nuclei	Adipose
26	chr8:122815400-122816000	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr8:122815400-122816000	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr8:122815400-122816000	Enhancers	Duodenum Mucosa	Duodenum
29	chr8:122815400-122816000	Enhancers	Fetal Intestine Small	intestine
30	chr8:122815400-122816200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr8:122815400-122816200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr8:122815400-122816200	Enhancers	NHDF-Ad	bronchial
33	chr8:122815400-122816200	Enhancers	NHEK	skin
34	chr8:122815400-122816400	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr8:122815400-122818200	Weak transcription	HSMM	muscle

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