Variant report

Variant	rs60355701
Chromosome Location	chr17:38768537-38768538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:38480192..38482412-chr17:38766976..38769922,2	MCF-7	breast:
2	chr17:38476990..38479317-chr17:38767726..38769370,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131759	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11078949	1.00[EUR][1000 genomes]
rs11657772	1.00[EUR][1000 genomes]
rs12936773	1.00[EUR][1000 genomes]
rs3136693	1.00[EUR][1000 genomes]
rs34733633	1.00[EUR][1000 genomes]
rs35935440	1.00[EUR][1000 genomes]
rs35941326	1.00[EUR][1000 genomes]
rs57393313	1.00[EUR][1000 genomes]
rs58281977	1.00[EUR][1000 genomes]
rs59333312	1.00[EUR][1000 genomes]
rs61289871	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7207004	1.00[EUR][1000 genomes]
rs7225036	1.00[EUR][1000 genomes]
rs73293410	1.00[EUR][1000 genomes]
rs73293414	1.00[EUR][1000 genomes]
rs73297427	1.00[EUR][1000 genomes]
rs73983088	1.00[EUR][1000 genomes]
rs73983091	1.00[EUR][1000 genomes]
rs8082488	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv574994	chr17:38719799-38824636	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2758454	chr17:38748300-38850104	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2758689	chr17:38748300-38850104	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38761800-38769000	Weak transcription	Esophagus	oesophagus
2	chr17:38761800-38769000	Weak transcription	Spleen	Spleen
3	chr17:38763400-38775600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr17:38764200-38769000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr17:38764200-38769200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr17:38764200-38770800	Weak transcription	Lung	lung
7	chr17:38764400-38769000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr17:38764400-38769400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr17:38764600-38769000	Enhancers	Primary T cells fromperipheralblood	blood
10	chr17:38764600-38769000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr17:38764600-38769000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr17:38764600-38769000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr17:38764600-38769000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr17:38764600-38769000	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr17:38764600-38769000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr17:38764600-38769000	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr17:38764800-38771000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr17:38765200-38769000	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr17:38765200-38769200	Weak transcription	Primary B cells from cord blood	blood
20	chr17:38765400-38770800	Weak transcription	Placenta	Placenta
21	chr17:38766200-38769000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr17:38767000-38769000	Weak transcription	Primary B cells from peripheral blood	blood
23	chr17:38768000-38770000	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr17:38768400-38768600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr17:38768400-38768600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr17:38768400-38768600	Enhancers	Thymus	Thymus
27	chr17:38768400-38768800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr17:38768400-38768800	Weak transcription	Fetal Thymus	thymus
29	chr17:38768400-38770000	Flanking Active TSS	Primary T cells from cord blood	blood
30	chr17:38768400-38770000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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