Variant report

Variant	rs61289871
Chromosome Location	chr17:38843130-38843131
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11078949	1.00[EUR][1000 genomes]
rs11657772	1.00[EUR][1000 genomes]
rs12936773	1.00[EUR][1000 genomes]
rs3136693	1.00[EUR][1000 genomes]
rs34733633	1.00[EUR][1000 genomes]
rs35935440	1.00[EUR][1000 genomes]
rs35941326	1.00[EUR][1000 genomes]
rs57393313	1.00[EUR][1000 genomes]
rs58281977	1.00[EUR][1000 genomes]
rs59333312	1.00[EUR][1000 genomes]
rs60355701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7207004	1.00[EUR][1000 genomes]
rs7225036	1.00[EUR][1000 genomes]
rs73293410	1.00[EUR][1000 genomes]
rs73293414	1.00[EUR][1000 genomes]
rs73297427	1.00[EUR][1000 genomes]
rs73983088	1.00[EUR][1000 genomes]
rs73983091	1.00[EUR][1000 genomes]
rs8082488	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758454	chr17:38748300-38850104	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv2758689	chr17:38748300-38850104	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv431626	chr17:38770965-38999722	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv908225	chr17:38776406-38868480	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38841000-38851600	Weak transcription	Pancreas	Pancrea
2	chr17:38842600-38843800	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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