Variant report

Variant	rs73293414
Chromosome Location	chr17:38705849-38705850
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:30)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:30 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38702522..38704504-chr17:38705149..38707900,2	MCF-7	breast:
2	chr17:38673009..38676029-chr17:38703569..38707305,5	MCF-7	breast:
3	chr17:38705264..38705952-chr17:38738284..38739171,2	MCF-7	breast:
4	chr17:38705221..38706075-chr17:38732221..38733263,5	MCF-7	breast:
5	chr17:38703976..38705851-chr17:38737210..38738794,2	MCF-7	breast:
6	chr17:38676325..38680650-chr17:38704875..38709448,7	MCF-7	breast:
7	chr17:38705403..38706124-chr17:38732246..38732916,4	MCF-7	breast:
8	chr17:38597366..38608449-chr17:38702297..38713586,48	MCF-7	breast:
9	chr17:38466291..38480319-chr17:38700155..38712986,33	MCF-7	breast:
10	chr17:38705153..38706254-chr17:38732050..38733263,7	MCF-7	breast:
11	chr17:38704352..38709633-chr17:38730788..38735534,10	MCF-7	breast:
12	chr17:38705642..38709928-chr17:38772338..38775854,5	MCF-7	breast:
13	chr17:38598113..38601965-chr17:38705104..38709206,8	MCF-7	breast:
14	chr17:38705213..38706080-chr17:39571895..39572778,2	MCF-7	breast:
15	chr17:38695377..38701983-chr17:38704174..38712040,12	MCF-7	breast:
16	chr17:38705731..38708080-chr17:39693080..39694676,2	MCF-7	breast:
17	chr17:38653160..38655925-chr17:38703995..38706258,2	MCF-7	breast:
18	chr17:38604542..38605519-chr17:38705442..38706206,4	MCF-7	breast:
19	chr17:38689023..38690777-chr17:38705235..38707470,2	MCF-7	breast:
20	chr17:38694812..38700047-chr17:38702402..38706263,6	K562	blood:
21	chr17:38703124..38707421-chr17:38736644..38740073,5	MCF-7	breast:
22	chr12:52583438..52585132-chr17:38705740..38708246,2	MCF-7	breast:
23	chr17:38705486..38706123-chr17:38843516..38844296,2	MCF-7	breast:
24	chr17:38475627..38478371-chr17:38705771..38707346,2	MCF-7	breast:
25	chr17:38604673..38605386-chr17:38705138..38706045,2	MCF-7	breast:
26	chr17:38481232..38483242-chr17:38705290..38708203,2	MCF-7	breast:
27	chr11:9482141..9483789-chr17:38705846..38708351,2	MCF-7	breast:
28	chr17:38705204..38706104-chr17:38732247..38733122,6	MCF-7	breast:
29	chr17:38604703..38605611-chr17:38705194..38706100,5	MCF-7	breast:
30	chr17:38604638..38605611-chr17:38705194..38706100,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000131759	Chromatin interaction
ENSG00000141753	Chromatin interaction
ENSG00000266088	Chromatin interaction
ENSG00000166478	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11078949	1.00[EUR][1000 genomes]
rs11657772	1.00[EUR][1000 genomes]
rs12936773	1.00[EUR][1000 genomes]
rs3136693	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34733633	1.00[EUR][1000 genomes]
rs35935440	1.00[EUR][1000 genomes]
rs35941326	1.00[EUR][1000 genomes]
rs57393313	1.00[EUR][1000 genomes]
rs58281977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59333312	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60355701	1.00[EUR][1000 genomes]
rs61289871	1.00[EUR][1000 genomes]
rs7207004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7225036	1.00[EUR][1000 genomes]
rs73293410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73297427	1.00[EUR][1000 genomes]
rs73983088	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73983091	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8082488	1.00[EUR][1000 genomes]

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38698000-38708400	Enhancers	Fetal Thymus	thymus
2	chr17:38698200-38708200	Enhancers	Primary T cells fromperipheralblood	blood
3	chr17:38699400-38710200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr17:38699600-38707800	Weak transcription	Brain Angular Gyrus	brain
5	chr17:38699600-38709800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr17:38701400-38708000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr17:38701400-38708000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr17:38701600-38709000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr17:38702000-38709200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr17:38702000-38710200	Weak transcription	Gastric	stomach
11	chr17:38702200-38710000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr17:38702400-38710000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr17:38703000-38708400	Enhancers	Primary B cells from peripheral blood	blood
14	chr17:38703000-38708800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr17:38703000-38709200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr17:38703000-38709600	Enhancers	Primary B cells from cord blood	blood
17	chr17:38703200-38706200	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr17:38703200-38714400	Enhancers	Lung	lung
19	chr17:38703200-38716800	Enhancers	Fetal Muscle Leg	muscle
20	chr17:38703400-38706000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr17:38703400-38706200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr17:38703400-38706200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr17:38703400-38707200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr17:38703400-38707200	Enhancers	GM12878-XiMat	blood
25	chr17:38703400-38707400	Enhancers	HSMMtube	muscle
26	chr17:38703400-38708400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr17:38703400-38711000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr17:38703400-38711200	Enhancers	Fetal Stomach	stomach
29	chr17:38703400-38712000	Enhancers	Esophagus	oesophagus
30	chr17:38703400-38712400	Enhancers	Left Ventricle	heart
31	chr17:38703400-38713400	Enhancers	Fetal Muscle Trunk	muscle
32	chr17:38703600-38706200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr17:38703600-38706400	Enhancers	Duodenum Mucosa	Duodenum
34	chr17:38703600-38706600	Enhancers	Right Ventricle	heart
35	chr17:38703600-38706800	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr17:38703600-38707800	Enhancers	NHDF-Ad	bronchial
37	chr17:38703600-38708000	Enhancers	Rectal Smooth Muscle	rectum
38	chr17:38703600-38708400	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr17:38703600-38708800	Enhancers	Spleen	Spleen
40	chr17:38703600-38711800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr17:38703600-38717200	Enhancers	Placenta	Placenta
42	chr17:38703800-38706200	Enhancers	Stomach Mucosa	stomach
43	chr17:38703800-38709600	Enhancers	Adipose Nuclei	Adipose
44	chr17:38703800-38710200	Enhancers	Right Atrium	heart
45	chr17:38703800-38710200	Enhancers	NHLF	lung
46	chr17:38703800-38711000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr17:38703800-38711600	Enhancers	Colon Smooth Muscle	Colon
48	chr17:38704000-38706400	Flanking Active TSS	HepG2	liver
49	chr17:38704000-38706600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr17:38704000-38708200	Flanking Active TSS	A549	lung

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