Variant report

Variant	rs7207004
Chromosome Location	chr17:38702591-38702592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38702522..38704504-chr17:38705149..38707900,2	MCF-7	breast:
2	chr17:38597366..38608449-chr17:38702297..38713586,48	MCF-7	breast:
3	chr17:38466291..38480319-chr17:38700155..38712986,33	MCF-7	breast:
4	chr17:38696903..38699108-chr17:38700807..38704169,3	MCF-7	breast:
5	chr17:38518849..38521739-chr17:38702520..38705372,3	MCF-7	breast:
6	chr17:38597417..38600075-chr17:38700629..38704119,3	MCF-7	breast:
7	chr17:38694812..38700047-chr17:38702402..38706263,6	K562	blood:

Variant related genes	Relation type
ENSG00000131759	Chromatin interaction
ENSG00000183153	Chromatin interaction
ENSG00000141753	Chromatin interaction

rs_ID	r²[population]
rs11078949	1.00[EUR][1000 genomes]
rs11657772	1.00[EUR][1000 genomes]
rs12936773	1.00[EUR][1000 genomes]
rs3136693	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34733633	1.00[EUR][1000 genomes]
rs35935440	1.00[EUR][1000 genomes]
rs35941326	1.00[EUR][1000 genomes]
rs57393313	1.00[EUR][1000 genomes]
rs58281977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59333312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60355701	1.00[EUR][1000 genomes]
rs61289871	1.00[EUR][1000 genomes]
rs7225036	1.00[EUR][1000 genomes]
rs73293410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73293414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73297427	1.00[EUR][1000 genomes]
rs73983088	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73983091	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8082488	1.00[EUR][1000 genomes]

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38698000-38708400	Enhancers	Fetal Thymus	thymus
2	chr17:38698200-38708200	Enhancers	Primary T cells fromperipheralblood	blood
3	chr17:38698400-38703600	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr17:38698400-38704800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr17:38698800-38703600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr17:38699200-38703400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr17:38699200-38703600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr17:38699200-38703800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr17:38699400-38703200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr17:38699400-38703600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr17:38699400-38703800	Weak transcription	Brain Hippocampus Middle	brain
12	chr17:38699400-38710200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr17:38699600-38703400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr17:38699600-38703400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr17:38699600-38703400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr17:38699600-38703400	Weak transcription	Fetal Brain Female	brain
17	chr17:38699600-38703800	Weak transcription	Brain Substantia Nigra	brain
18	chr17:38699600-38704800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr17:38699600-38707800	Weak transcription	Brain Angular Gyrus	brain
20	chr17:38699600-38709800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr17:38699800-38703400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr17:38699800-38703800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr17:38699800-38703800	Weak transcription	Stomach Mucosa	stomach
24	chr17:38699800-38704000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr17:38699800-38704000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr17:38699800-38704800	Weak transcription	Fetal Intestine Large	intestine
27	chr17:38699800-38705000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr17:38699800-38705000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr17:38699800-38705000	Weak transcription	Brain Anterior Caudate	brain
30	chr17:38700000-38703200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr17:38700000-38703200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr17:38700000-38703200	Weak transcription	Brain Germinal Matrix	brain
33	chr17:38700000-38703400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr17:38700000-38703400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr17:38700000-38703400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr17:38700000-38703400	Weak transcription	Esophagus	oesophagus
37	chr17:38700000-38703400	Weak transcription	Fetal Brain Male	brain
38	chr17:38700000-38703600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr17:38700000-38703600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr17:38700000-38703800	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr17:38700000-38703800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr17:38700000-38703800	Weak transcription	NH-A	brain
43	chr17:38700000-38704000	Weak transcription	Fetal Intestine Small	intestine
44	chr17:38700000-38704000	Weak transcription	Small Intestine	intestine
45	chr17:38700000-38705000	Weak transcription	Colonic Mucosa	Colon
46	chr17:38700000-38705000	Weak transcription	Osteobl	bone
47	chr17:38700200-38703000	Weak transcription	Primary B cells from cord blood	blood
48	chr17:38700200-38703200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr17:38700200-38703400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr17:38700200-38703400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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