Variant report

Variant	rs60534803
Chromosome Location	chr12:45823708-45823709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45821285..45822837-chr12:45823323..45825072,2	K562	blood:
2	chr12:45816584..45818439-chr12:45823232..45825090,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11183016	1.00[AMR][1000 genomes]
rs57266792	0.80[AFR][1000 genomes]
rs58337263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59030619	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59846961	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59899152	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61471266	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73279690	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73279696	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73279698	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73279700	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281450	0.80[AFR][1000 genomes]
rs73281506	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281507	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281508	1.00[AMR][1000 genomes]
rs73281510	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281512	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281519	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281526	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281536	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281545	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281549	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281553	0.88[AFR][1000 genomes]
rs73281555	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281565	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281566	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281571	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281577	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281581	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281585	0.88[AFR][1000 genomes]
rs73281588	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281594	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281599	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281602	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283310	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283315	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283340	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45780400-45829800	Weak transcription	Brain Anterior Caudate	brain
2	chr12:45783400-45826400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:45786600-45827000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:45792000-45828600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr12:45792600-45827000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr12:45793000-45827600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr12:45795600-45825600	Strong transcription	Fetal Intestine Large	intestine
8	chr12:45796400-45829600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr12:45796600-45828400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr12:45796600-45828600	Weak transcription	Brain Substantia Nigra	brain
11	chr12:45796600-45828800	Weak transcription	Brain Angular Gyrus	brain
12	chr12:45804400-45828000	Weak transcription	Brain Hippocampus Middle	brain
13	chr12:45804400-45830200	Weak transcription	Brain Germinal Matrix	brain
14	chr12:45806400-45825600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr12:45806800-45826000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr12:45806800-45829800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr12:45809600-45823800	Weak transcription	Esophagus	oesophagus
18	chr12:45809600-45824800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr12:45809600-45826600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr12:45809800-45824000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr12:45810600-45826000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr12:45810800-45825400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr12:45811600-45824400	Weak transcription	Right Ventricle	heart
24	chr12:45811600-45826800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr12:45811600-45829400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr12:45812200-45825800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr12:45812200-45826600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr12:45812600-45832000	Weak transcription	Small Intestine	intestine
29	chr12:45813000-45829600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr12:45813200-45825200	Weak transcription	Fetal Brain Female	brain
31	chr12:45813800-45825200	Strong transcription	Dnd41	blood
32	chr12:45813800-45825800	Strong transcription	Adipose Nuclei	Adipose
33	chr12:45814000-45825600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr12:45814200-45824600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr12:45814400-45825600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr12:45814800-45825400	Strong transcription	Placenta	Placenta
37	chr12:45814800-45825600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr12:45814800-45825800	Strong transcription	Fetal Muscle Trunk	muscle
39	chr12:45814800-45825800	Strong transcription	Skeletal Muscle Female	skeletal muscle
40	chr12:45814800-45826000	Strong transcription	Skeletal Muscle Male	skeletal muscle
41	chr12:45815200-45824000	Strong transcription	Fetal Thymus	thymus
42	chr12:45815800-45824400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr12:45816200-45825000	Strong transcription	Primary T cells from cord blood	blood
44	chr12:45816200-45825000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr12:45816200-45825600	Strong transcription	Fetal Muscle Leg	muscle
46	chr12:45816400-45828200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr12:45817000-45825400	Weak transcription	K562	blood
48	chr12:45817000-45826200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr12:45817400-45828800	Weak transcription	NHEK	skin
50	chr12:45817800-45829200	Weak transcription	Psoas Muscle	Psoas

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