Variant report

Variant	rs73283338
Chromosome Location	chr12:45826351-45826352
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11183016	1.00[AMR][1000 genomes]
rs57266792	0.80[AFR][1000 genomes]
rs58337263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59030619	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59846961	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59899152	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60534803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61471266	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73279690	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73279696	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73279698	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73279700	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281450	0.80[AFR][1000 genomes]
rs73281506	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281507	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281508	1.00[AMR][1000 genomes]
rs73281510	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281512	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281519	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281526	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281536	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281545	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281549	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281553	0.88[AFR][1000 genomes]
rs73281555	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281565	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281566	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281571	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281577	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281581	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281585	0.88[AFR][1000 genomes]
rs73281588	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281594	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281599	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281602	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283310	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283315	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283340	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45780400-45829800	Weak transcription	Brain Anterior Caudate	brain
2	chr12:45783400-45826400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:45786600-45827000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:45792000-45828600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr12:45792600-45827000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr12:45793000-45827600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr12:45796400-45829600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr12:45796600-45828400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr12:45796600-45828600	Weak transcription	Brain Substantia Nigra	brain
10	chr12:45796600-45828800	Weak transcription	Brain Angular Gyrus	brain
11	chr12:45804400-45828000	Weak transcription	Brain Hippocampus Middle	brain
12	chr12:45804400-45830200	Weak transcription	Brain Germinal Matrix	brain
13	chr12:45806800-45829800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr12:45809600-45826600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr12:45811600-45826800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr12:45811600-45829400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr12:45812200-45826600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr12:45812600-45832000	Weak transcription	Small Intestine	intestine
19	chr12:45813000-45829600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr12:45816400-45828200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr12:45817400-45828800	Weak transcription	NHEK	skin
22	chr12:45817800-45829200	Weak transcription	Psoas Muscle	Psoas
23	chr12:45818000-45826400	Weak transcription	Fetal Kidney	kidney
24	chr12:45818000-45828600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr12:45819400-45827600	Strong transcription	Liver	Liver
26	chr12:45819600-45830000	Weak transcription	GM12878-XiMat	blood
27	chr12:45819800-45826400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr12:45820000-45826600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr12:45820000-45828000	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr12:45820600-45827000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr12:45821000-45826600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr12:45821200-45829200	Weak transcription	Right Atrium	heart
33	chr12:45821200-45829400	Weak transcription	NHLF	lung
34	chr12:45821200-45829800	Weak transcription	Fetal Heart	heart
35	chr12:45821200-45833000	Weak transcription	NH-A	brain
36	chr12:45822000-45826600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr12:45822000-45828000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr12:45822200-45826800	Weak transcription	Primary B cells from peripheral blood	blood
39	chr12:45822200-45828000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr12:45822600-45827000	Weak transcription	HepG2	liver
41	chr12:45822800-45826600	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr12:45823000-45826800	Weak transcription	HSMMtube	muscle
43	chr12:45823000-45829000	Weak transcription	Rectal Smooth Muscle	rectum
44	chr12:45823200-45829800	Weak transcription	Fetal Lung	lung
45	chr12:45824000-45826400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr12:45824200-45829800	Weak transcription	Osteobl	bone
47	chr12:45824200-45832800	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr12:45824400-45826600	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr12:45824600-45827000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr12:45824600-45829400	Weak transcription	HMEC	breast

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