Variant report

Variant	rs73283352
Chromosome Location	chr12:45829917-45829918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45815659..45817230-chr12:45827515..45830278,2	MCF-7	breast:
2	chr12:45820246..45822416-chr12:45828146..45831023,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11183016	1.00[AMR][1000 genomes]
rs57266792	0.80[AFR][1000 genomes]
rs58337263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59030619	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59846961	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59899152	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60534803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61471266	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73279690	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73279696	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73279698	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73279700	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281450	0.80[AFR][1000 genomes]
rs73281506	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281507	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281508	1.00[AMR][1000 genomes]
rs73281510	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281512	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281519	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281526	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281536	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281545	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281549	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281553	0.88[AFR][1000 genomes]
rs73281555	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281565	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281566	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281571	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281577	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281581	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281585	0.88[AFR][1000 genomes]
rs73281588	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281594	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281599	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281602	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283310	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283315	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283340	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45804400-45830200	Weak transcription	Brain Germinal Matrix	brain
2	chr12:45812600-45832000	Weak transcription	Small Intestine	intestine
3	chr12:45819600-45830000	Weak transcription	GM12878-XiMat	blood
4	chr12:45821200-45833000	Weak transcription	NH-A	brain
5	chr12:45824200-45832800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr12:45824800-45833000	Weak transcription	NHDF-Ad	bronchial
7	chr12:45825400-45830000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr12:45825600-45830000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr12:45825600-45830000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr12:45825600-45831800	Weak transcription	Lung	lung
11	chr12:45825600-45831800	Weak transcription	Ovary	ovary
12	chr12:45825600-45835800	Weak transcription	Colon Smooth Muscle	Colon
13	chr12:45826200-45830000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr12:45826200-45832800	Weak transcription	HSMM	muscle
15	chr12:45826400-45830400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr12:45827600-45830000	Weak transcription	Liver	Liver
17	chr12:45827600-45830200	Weak transcription	Fetal Stomach	stomach
18	chr12:45827600-45830600	Weak transcription	Gastric	stomach
19	chr12:45827600-45832800	Weak transcription	Pancreas	Pancrea
20	chr12:45827600-45834800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr12:45827600-45842800	Weak transcription	Aorta	Aorta
22	chr12:45828000-45830000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr12:45828000-45830000	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr12:45828000-45830000	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr12:45828000-45830000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr12:45828000-45830200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr12:45828000-45841800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr12:45828200-45830200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr12:45828200-45830400	Weak transcription	Primary B cells from cord blood	blood
30	chr12:45828200-45831000	Weak transcription	Primary T cells from cord blood	blood
31	chr12:45828400-45830200	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr12:45828400-45830400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr12:45828400-45835400	Weak transcription	Adipose Nuclei	Adipose
34	chr12:45828600-45830200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr12:45828600-45830200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr12:45828600-45830200	Enhancers	Brain Substantia Nigra	brain
37	chr12:45828600-45830400	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr12:45828600-45830600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr12:45828800-45830000	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr12:45828800-45830000	Enhancers	Brain Cingulate Gyrus	brain
41	chr12:45828800-45830400	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr12:45829000-45830200	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr12:45829000-45830200	Enhancers	Thymus	Thymus
44	chr12:45829000-45830400	Enhancers	HUVEC	blood vessel
45	chr12:45829200-45830000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr12:45829200-45830000	Enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr12:45829200-45830000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr12:45829200-45830000	Enhancers	Fetal Thymus	thymus
49	chr12:45829200-45830000	Enhancers	Right Atrium	heart
50	chr12:45829400-45830200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell

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