Variant report

Variant	rs6137905
Chromosome Location	chr20:23340938-23340939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:23340935-23347328	IMR90	lung:	n/a	n/a

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:23339592..23341756-chr20:23608896..23611631,2	MCF-7	breast:
2	chr20:23338880..23340972-chr20:23401257..23403000,2	K562	blood:
3	chr17:56735124..56736858-chr20:23339891..23342718,2	MCF-7	breast:
4	chr20:23339508..23341460-chr20:23392267..23394338,2	MCF-7	breast:
5	chr20:23029581..23032412-chr20:23340332..23342331,2	MCF-7	breast:
6	chr20:23337918..23344174-chr20:23400107..23404916,9	MCF-7	breast:
7	chr20:23340884..23343229-chr20:23616953..23618725,2	K562	blood:
8	chr20:23339311..23341771-chr20:23390617..23393220,2	MCF-7	breast:
9	chr20:23339750..23342379-chr20:23399207..23403196,4	MCF-7	breast:
10	chr20:23338809..23345308-chr20:23399768..23403114,12	K562	blood:
11	chr20:23277266..23279560-chr20:23339707..23341405,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000232645	TF binding region
GZF1	TF binding region
ENSG00000125814	Chromatin interaction
ENSG00000101439	Chromatin interaction
ENSG00000178726	Chromatin interaction
ENSG00000202077	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1056394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11087428	0.85[EUR][1000 genomes]
rs11905630	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1419005	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1419006	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1419009	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1419010	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16985308	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1936013	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2000261	0.88[ASN][1000 genomes]
rs2051093	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2144381	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2224074	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2236022	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2249943	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2251145	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2252824	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2275787	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2281429	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2424528	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2424530	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2424531	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2424532	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2424534	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2424535	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2424536	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2424537	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2424539	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2424540	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2424541	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2424544	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2424545	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2424546	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2424548	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2424549	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2424550	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2424551	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2424552	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2424554	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2424556	0.85[EUR][1000 genomes]
rs2424557	0.84[EUR][1000 genomes]
rs3746734	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4813490	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4813491	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4813493	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4813495	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4815199	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4815203	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6048778	0.90[ASN][1000 genomes]
rs6076057	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6076059	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6076071	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6076073	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6083083	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6083084	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6083085	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6083087	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083088	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6083092	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6083095	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6083099	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6083100	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6083104	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6083110	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6083111	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6083119	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6114085	0.85[EUR][1000 genomes]
rs6132604	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6132607	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6132612	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6137899	0.91[ASN][1000 genomes]
rs6137908	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6137909	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6137922	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6137924	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6137934	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6137940	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6137949	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7269627	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs743022	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs743023	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs743024	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs761726	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7988	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8118688	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8183442	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6137905	NAPB	cis	Artery Tibial	GTEx
rs6137905	NAPB	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23338800-23341800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:23338800-23341800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr20:23338800-23341800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr20:23338800-23341800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr20:23338800-23341800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr20:23338800-23342000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr20:23338800-23342000	Weak transcription	Gastric	stomach
8	chr20:23339200-23341600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr20:23339200-23341600	Weak transcription	HSMMtube	muscle
10	chr20:23339200-23341800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr20:23339200-23341800	Weak transcription	Esophagus	oesophagus
12	chr20:23339200-23341800	Weak transcription	Lung	lung
13	chr20:23339200-23341800	Weak transcription	Ovary	ovary
14	chr20:23339200-23342000	Weak transcription	Aorta	Aorta
15	chr20:23339200-23342200	Weak transcription	Spleen	Spleen
16	chr20:23339400-23341200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr20:23339400-23341200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr20:23339400-23341200	Weak transcription	NHDF-Ad	bronchial
19	chr20:23339400-23341400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr20:23339400-23341400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr20:23339400-23341400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr20:23339400-23341600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr20:23339400-23341600	Enhancers	Fetal Intestine Large	intestine
24	chr20:23339400-23341600	Weak transcription	NH-A	brain
25	chr20:23339400-23341800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr20:23339400-23341800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr20:23339400-23341800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr20:23339400-23341800	Enhancers	Fetal Intestine Small	intestine
29	chr20:23339400-23341800	Weak transcription	Right Atrium	heart
30	chr20:23339400-23341800	Weak transcription	Right Ventricle	heart
31	chr20:23339600-23341200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr20:23339600-23341200	Weak transcription	Adipose Nuclei	Adipose
33	chr20:23339600-23341200	Weak transcription	Fetal Brain Male	brain
34	chr20:23339600-23341200	Weak transcription	Osteobl	bone
35	chr20:23339600-23341400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr20:23339600-23341400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr20:23339600-23341400	Weak transcription	Brain Angular Gyrus	brain
38	chr20:23339600-23341400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr20:23339600-23341400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr20:23339600-23341400	Weak transcription	HUVEC	blood vessel
41	chr20:23339600-23341600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr20:23339600-23341600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr20:23339600-23341600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr20:23339600-23341600	Weak transcription	HSMM	muscle
45	chr20:23339600-23341800	Enhancers	Stomach Mucosa	stomach
46	chr20:23339800-23341000	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr20:23339800-23341200	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr20:23339800-23341200	Weak transcription	Primary B cells from peripheral blood	blood
49	chr20:23339800-23341200	Weak transcription	Primary hematopoietic stem cells	blood
50	chr20:23339800-23341200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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