Variant report

Variant	rs6137899
Chromosome Location	chr20:23320137-23320138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23312686..23317926-chr20:23318628..23321292,6	K562	blood:
2	chr20:23315045..23317329-chr20:23318645..23320307,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1056394	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11905630	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1419005	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1419006	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1419009	0.84[ASN][1000 genomes]
rs1419010	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16985308	0.87[ASN][1000 genomes]
rs1891688	0.84[CEU][hapmap]
rs1936013	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1984279	0.87[CEU][hapmap]
rs2000261	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2051093	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2144381	0.81[CHB][hapmap];0.84[ASN][1000 genomes]
rs2224074	0.81[CHB][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2236022	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2249943	0.81[AMR][1000 genomes]
rs2252824	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2275787	0.91[ASN][1000 genomes]
rs2275788	0.91[ASN][1000 genomes]
rs2424528	0.87[ASN][1000 genomes]
rs2424530	0.84[ASN][1000 genomes]
rs2424531	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2424532	0.80[CHB][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2424554	0.82[CHB][hapmap]
rs3746734	0.88[ASN][1000 genomes]
rs4813490	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4813491	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4813493	0.81[CHB][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4815199	0.88[ASN][1000 genomes]
rs6048778	0.81[ASN][1000 genomes]
rs6076057	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6076059	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6083083	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6083084	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6083085	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6083087	0.91[ASN][1000 genomes]
rs6083088	0.81[CHB][hapmap];0.90[ASN][1000 genomes]
rs6083092	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6083095	0.88[ASN][1000 genomes]
rs6083099	0.87[ASN][1000 genomes]
rs6083100	0.81[CHB][hapmap];0.87[ASN][1000 genomes]
rs6083104	0.84[ASN][1000 genomes]
rs6083110	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6083111	0.81[CHB][hapmap]
rs6132597	0.84[CEU][hapmap]
rs6132604	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6137905	0.91[ASN][1000 genomes]
rs6137908	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6137909	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6137922	0.80[ASN][1000 genomes]
rs6137924	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7269627	0.87[ASN][1000 genomes]
rs743024	0.91[ASN][1000 genomes]
rs7988	0.88[ASN][1000 genomes]
rs8118688	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6137899	NAPB	Cis_1M	lymphoblastoid	RTeQTL
rs6137899	NAPB	cis	Artery Tibial	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23315600-23321000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr20:23316400-23320600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:23317200-23321600	Weak transcription	GM12878-XiMat	blood
4	chr20:23318200-23320400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr20:23319600-23324600	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links