Variant report

Variant	rs8118688
Chromosome Location	chr20:23320850-23320851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:22672035..22672822-chr20:23320600..23321396,3	MCF-7	breast:
2	chr20:23031211..23032253-chr20:23320806..23321356,3	K562	blood:
3	chr20:23312686..23317926-chr20:23318628..23321292,6	K562	blood:
4	chr20:23031307..23031875-chr20:23320841..23321533,2	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1056394	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11905630	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1419005	0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1419006	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1419009	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1419010	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16985308	0.89[ASN][1000 genomes]
rs1891688	0.83[CEU][hapmap]
rs1936013	0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1984279	0.87[CEU][hapmap]
rs2000261	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2051093	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2144381	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2224074	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2236022	0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2249943	1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2251145	0.82[ASN][1000 genomes]
rs2252824	0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2275787	0.93[ASN][1000 genomes]
rs2275788	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2281429	0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2424528	0.89[ASN][1000 genomes]
rs2424530	0.86[ASN][1000 genomes]
rs2424531	0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2424532	0.94[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2424534	0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs2424535	0.81[ASN][1000 genomes]
rs2424536	0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs2424537	0.82[ASN][1000 genomes]
rs2424539	0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2424540	0.81[ASN][1000 genomes]
rs2424541	0.82[ASN][1000 genomes]
rs2424544	0.82[ASN][1000 genomes]
rs2424545	0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs2424546	0.82[ASN][1000 genomes]
rs2424548	0.82[ASN][1000 genomes]
rs2424549	0.82[ASN][1000 genomes]
rs2424550	0.80[ASN][1000 genomes]
rs2424551	0.82[ASN][1000 genomes]
rs2424552	0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs2424554	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs3746734	0.94[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs4813490	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4813491	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4813493	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4813495	0.82[ASN][1000 genomes]
rs4815199	0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs4815203	0.82[ASN][1000 genomes]
rs6048778	0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs6076057	0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6076059	0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6083083	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6083084	0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6083085	0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6083087	0.93[ASN][1000 genomes]
rs6083088	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs6083092	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6083095	0.91[ASN][1000 genomes]
rs6083099	0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs6083100	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs6083104	0.94[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs6083110	0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6083111	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs6083119	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6132597	0.84[CEU][hapmap]
rs6132604	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6132607	0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs6137899	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6137905	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6137908	0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6137909	0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6137922	0.83[ASN][1000 genomes]
rs6137924	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6137934	0.82[ASN][1000 genomes]
rs7269627	0.89[ASN][1000 genomes]
rs743023	0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs743024	0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs7988	0.94[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs8118688	NAPB	Cis_1M	lymphoblastoid	RTeQTL
rs8118688	NAPB	cis	Artery Tibial	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23315600-23321000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr20:23317200-23321600	Weak transcription	GM12878-XiMat	blood
3	chr20:23319600-23324600	Weak transcription	Fetal Heart	heart
4	chr20:23320600-23321000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr20:23320800-23321000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr20:23320800-23321200	Enhancers	HepG2	liver

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