Variant report

Variant	rs2000261
Chromosome Location	chr20:23311090-23311091
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23308765..23311437-chr20:23321405..23324295,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1056394	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11905630	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1419005	0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1419006	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1419009	0.81[ASN][1000 genomes]
rs1419010	0.81[ASN][1000 genomes]
rs16985308	0.84[ASN][1000 genomes]
rs1891688	0.80[CEU][hapmap]
rs1936013	0.94[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1984279	0.83[CEU][hapmap]
rs2051093	0.81[ASN][1000 genomes]
rs2144381	0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2224074	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2236022	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs2252824	0.94[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2275787	0.88[ASN][1000 genomes]
rs2275788	0.88[ASN][1000 genomes]
rs2281429	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs2424528	0.84[ASN][1000 genomes]
rs2424530	0.81[ASN][1000 genomes]
rs2424531	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs2424532	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs2424534	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs2424536	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs2424539	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs2424545	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs2424552	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs2424554	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs3746734	0.94[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs4813490	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4813491	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4813493	0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs4815199	0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs6048778	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs6076057	0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6076059	0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6083083	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6083084	0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6083085	0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6083087	0.88[ASN][1000 genomes]
rs6083088	0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs6083092	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6083095	0.86[ASN][1000 genomes]
rs6083099	0.94[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs6083100	0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs6083104	0.94[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs6083110	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs6083111	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs6132597	0.81[CEU][hapmap]
rs6132604	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6132607	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs6137899	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6137905	0.88[ASN][1000 genomes]
rs6137908	0.94[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6137909	0.94[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6137924	0.81[ASN][1000 genomes]
rs7269627	0.84[ASN][1000 genomes]
rs743023	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs743024	0.94[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs7988	0.94[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs8118688	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2000261	NAPB	cis	Artery Tibial	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23307800-23314800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr20:23309400-23312200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:23310800-23312000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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