Variant report

Variant	rs61386671
Chromosome Location	chr5:154389379-154389380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr5:154389333-154389598	SH-SY5Y	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154388177..154391057-chr5:154394147..154395904,2	MCF-7	breast:

Variant related genes	Relation type
KIF4B	TF binding region

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1390598	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390600	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390601	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390602	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390603	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116671	0.81[EUR][1000 genomes]
rs17116677	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116679	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116683	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116698	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116701	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17570361	0.90[EUR][1000 genomes]
rs39615	0.86[EUR][1000 genomes]
rs39953	0.86[EUR][1000 genomes]
rs58395756	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580124	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280761	0.86[EUR][1000 genomes]
rs73280762	0.86[EUR][1000 genomes]
rs73280768	0.86[EUR][1000 genomes]
rs73280770	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280778	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280785	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280786	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280788	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280792	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280795	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280797	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280799	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282508	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282513	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282516	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282519	0.90[EUR][1000 genomes]
rs73282521	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282522	0.81[EUR][1000 genomes]
rs73282523	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282525	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282527	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282528	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282530	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73282533	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282538	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282539	0.90[EUR][1000 genomes]
rs73282553	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282555	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282558	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703040	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703227	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703386	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703765	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7719208	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7722783	0.83[ASN][1000 genomes]
rs7722922	0.83[ASN][1000 genomes]
rs7722949	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7723741	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7724303	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7724660	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816716	0.86[EUR][1000 genomes]
rs816724	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883058	chr5:154375465-154432580	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154386400-154389400	Enhancers	HepG2	liver
2	chr5:154389000-154390600	Enhancers	Fetal Heart	heart

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