Variant report

Variant	rs73282533
Chromosome Location	chr5:154384270-154384271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154324712..154325470-chr5:154383893..154384467,2	MCF-7	breast:

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:140)

rs_ID	r²[population]
rs10042134	0.85[EUR][1000 genomes]
rs13181649	0.85[EUR][1000 genomes]
rs1390598	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390600	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390601	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164192	0.85[EUR][1000 genomes]
rs164193	0.85[EUR][1000 genomes]
rs164194	0.85[EUR][1000 genomes]
rs164196	0.85[EUR][1000 genomes]
rs164198	0.85[EUR][1000 genomes]
rs164199	0.85[EUR][1000 genomes]
rs17116671	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17116677	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116698	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17570361	1.00[EUR][1000 genomes]
rs180903	0.85[EUR][1000 genomes]
rs184703	0.85[EUR][1000 genomes]
rs185323	0.85[EUR][1000 genomes]
rs186998	0.85[EUR][1000 genomes]
rs189439	0.85[EUR][1000 genomes]
rs2059045	0.85[EUR][1000 genomes]
rs2112219	0.85[EUR][1000 genomes]
rs2112222	0.85[EUR][1000 genomes]
rs2544827	0.85[EUR][1000 genomes]
rs2544862	0.85[EUR][1000 genomes]
rs2544871	0.85[EUR][1000 genomes]
rs2544872	0.85[EUR][1000 genomes]
rs2544873	0.85[EUR][1000 genomes]
rs2544877	0.85[EUR][1000 genomes]
rs2544881	0.85[EUR][1000 genomes]
rs2544882	0.85[EUR][1000 genomes]
rs2544883	0.85[EUR][1000 genomes]
rs2544885	0.85[EUR][1000 genomes]
rs255530	0.85[EUR][1000 genomes]
rs2560069	0.85[EUR][1000 genomes]
rs2644748	0.85[EUR][1000 genomes]
rs2688185	0.85[EUR][1000 genomes]
rs2688192	0.85[EUR][1000 genomes]
rs2688202	0.85[EUR][1000 genomes]
rs32426	0.85[EUR][1000 genomes]
rs346572	0.85[EUR][1000 genomes]
rs346573	0.85[EUR][1000 genomes]
rs348734	0.85[EUR][1000 genomes]
rs348736	0.85[EUR][1000 genomes]
rs348737	0.85[EUR][1000 genomes]
rs348738	0.85[EUR][1000 genomes]
rs348746	0.85[EUR][1000 genomes]
rs348753	0.85[EUR][1000 genomes]
rs348755	0.85[EUR][1000 genomes]
rs348758	0.85[EUR][1000 genomes]
rs39615	0.95[EUR][1000 genomes]
rs39953	0.95[EUR][1000 genomes]
rs40584	0.85[EUR][1000 genomes]
rs4958393	0.85[EUR][1000 genomes]
rs4958769	0.85[EUR][1000 genomes]
rs4958770	0.85[EUR][1000 genomes]
rs4958772	0.81[EUR][1000 genomes]
rs4958774	0.85[EUR][1000 genomes]
rs58395756	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59025588	0.85[EUR][1000 genomes]
rs59919514	0.85[EUR][1000 genomes]
rs61386671	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580117	0.85[EUR][1000 genomes]
rs6580119	0.85[EUR][1000 genomes]
rs6580121	0.85[EUR][1000 genomes]
rs6580124	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6879093	0.85[EUR][1000 genomes]
rs702743	0.85[EUR][1000 genomes]
rs73276760	0.85[EUR][1000 genomes]
rs73276766	0.85[EUR][1000 genomes]
rs73276769	0.85[EUR][1000 genomes]
rs73276780	0.85[EUR][1000 genomes]
rs73278805	0.85[EUR][1000 genomes]
rs73278819	0.85[EUR][1000 genomes]
rs73278843	0.85[EUR][1000 genomes]
rs73280717	0.85[EUR][1000 genomes]
rs73280724	0.85[EUR][1000 genomes]
rs73280726	0.85[EUR][1000 genomes]
rs73280747	0.85[EUR][1000 genomes]
rs73280749	0.85[EUR][1000 genomes]
rs73280750	0.85[EUR][1000 genomes]
rs73280761	0.95[EUR][1000 genomes]
rs73280762	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73280768	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73280770	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280778	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280785	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280786	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280788	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280792	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280795	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280797	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73282521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282523	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282527	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282530	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73282538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282539	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73282553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282555	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703040	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703386	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703765	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7719208	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7720538	0.85[EUR][1000 genomes]
rs7722783	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7722922	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7722949	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7723741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7724303	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7724660	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7733367	0.85[EUR][1000 genomes]
rs816715	0.85[EUR][1000 genomes]
rs816716	0.95[EUR][1000 genomes]
rs816724	0.89[EUR][1000 genomes]
rs816733	0.85[EUR][1000 genomes]
rs816736	0.85[EUR][1000 genomes]
rs816738	0.85[EUR][1000 genomes]
rs816739	0.85[EUR][1000 genomes]
rs816740	0.85[EUR][1000 genomes]
rs816742	0.85[EUR][1000 genomes]
rs816744	0.85[EUR][1000 genomes]
rs816745	0.85[EUR][1000 genomes]
rs816746	0.85[EUR][1000 genomes]
rs863650	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883058	chr5:154375465-154432580	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154381400-154386400	Weak transcription	HepG2	liver
2	chr5:154383800-154384600	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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