Variant report

Variant	rs7722783
Chromosome Location	chr5:154380657-154380658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1390598	0.83[ASN][1000 genomes]
rs1390600	0.83[ASN][1000 genomes]
rs1390601	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1390602	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1390603	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17116671	0.89[AMR][1000 genomes]
rs17116677	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17116679	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17116683	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17116698	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17116701	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs58395756	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61386671	0.83[ASN][1000 genomes]
rs6580124	0.83[ASN][1000 genomes]
rs73280762	0.89[AMR][1000 genomes]
rs73280768	0.89[AMR][1000 genomes]
rs73280770	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73280778	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73280785	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73280786	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73280788	0.83[ASN][1000 genomes]
rs73280792	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73280795	0.83[ASN][1000 genomes]
rs73280797	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73280799	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73282508	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73282513	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73282516	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73282519	0.89[AMR][1000 genomes]
rs73282521	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73282522	0.89[AMR][1000 genomes]
rs73282523	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73282525	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73282527	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73282528	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73282530	0.89[AMR][1000 genomes]
rs73282533	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73282538	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73282553	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73282555	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73282558	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7702842	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7703040	0.83[ASN][1000 genomes]
rs7703227	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7703386	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7703765	0.83[ASN][1000 genomes]
rs7719208	0.83[ASN][1000 genomes]
rs7722922	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7722949	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7723741	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7724303	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7724660	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv968117	chr5:154371654-154381973	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	nsv883058	chr5:154375465-154432580	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154377800-154381200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:154377800-154381800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:154377800-154381800	Weak transcription	HMEC	breast
4	chr5:154377800-154381800	Weak transcription	NHEK	skin
5	chr5:154380400-154381400	Enhancers	HepG2	liver

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