Variant report

Variant	rs73282522
Chromosome Location	chr5:154383224-154383225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1390598	0.90[EUR][1000 genomes]
rs1390600	0.90[EUR][1000 genomes]
rs1390601	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1390602	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1390603	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17116671	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17116677	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17116679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17116683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17116698	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17116701	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17570361	0.90[EUR][1000 genomes]
rs39615	0.86[EUR][1000 genomes]
rs39953	0.86[EUR][1000 genomes]
rs58395756	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61386671	0.81[EUR][1000 genomes]
rs6580124	0.90[EUR][1000 genomes]
rs73280761	0.86[EUR][1000 genomes]
rs73280762	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73280768	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73280770	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73280778	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73280785	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73280786	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73280788	0.90[EUR][1000 genomes]
rs73280792	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73280795	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73280797	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73280799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282523	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282527	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282530	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73282533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282538	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282539	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282553	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282555	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282558	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7703040	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7703227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7703386	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7703765	0.90[EUR][1000 genomes]
rs7719208	0.90[EUR][1000 genomes]
rs7722783	0.89[AMR][1000 genomes]
rs7722922	0.89[AMR][1000 genomes]
rs7722949	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7723741	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7724303	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7724660	0.90[EUR][1000 genomes]
rs816716	0.86[EUR][1000 genomes]
rs816724	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883058	chr5:154375465-154432580	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154381400-154386400	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links