Variant report

Variant	rs17116683
Chromosome Location	chr5:154382099-154382100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 146 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:145)

rs_ID	r²[population]
rs10042134	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs13181649	0.85[EUR][1000 genomes]
rs1390598	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390600	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390601	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164192	0.85[EUR][1000 genomes]
rs164193	0.85[EUR][1000 genomes]
rs164194	0.85[EUR][1000 genomes]
rs164196	0.85[EUR][1000 genomes]
rs164198	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs164199	0.85[EUR][1000 genomes]
rs17116671	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17116677	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116698	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17570361	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs180903	0.85[EUR][1000 genomes]
rs184703	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs185323	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs186998	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs189439	0.85[EUR][1000 genomes]
rs2059045	0.85[EUR][1000 genomes]
rs2112219	0.85[EUR][1000 genomes]
rs2112220	1.00[CEU][hapmap]
rs2112222	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2544827	0.85[EUR][1000 genomes]
rs2544862	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2544870	1.00[CEU][hapmap]
rs2544871	0.85[EUR][1000 genomes]
rs2544872	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs2544873	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2544877	0.85[EUR][1000 genomes]
rs2544881	0.85[EUR][1000 genomes]
rs2544882	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2544883	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2544885	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs255530	0.85[EUR][1000 genomes]
rs2560069	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2644747	1.00[CEU][hapmap]
rs2644748	0.85[EUR][1000 genomes]
rs2688185	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2688192	0.85[EUR][1000 genomes]
rs2688202	0.85[EUR][1000 genomes]
rs32426	0.85[EUR][1000 genomes]
rs346572	0.85[EUR][1000 genomes]
rs346573	0.85[EUR][1000 genomes]
rs348734	0.85[EUR][1000 genomes]
rs348736	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs348737	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs348738	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs348740	1.00[CEU][hapmap]
rs348746	0.85[EUR][1000 genomes]
rs348753	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs348755	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs348758	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs39615	0.95[EUR][1000 genomes]
rs39953	0.95[EUR][1000 genomes]
rs40584	0.85[EUR][1000 genomes]
rs4958393	0.85[EUR][1000 genomes]
rs4958769	0.85[EUR][1000 genomes]
rs4958770	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4958772	0.81[EUR][1000 genomes]
rs4958774	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs58395756	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59025588	0.85[EUR][1000 genomes]
rs59919514	0.85[EUR][1000 genomes]
rs61386671	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580117	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs6580119	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs6580121	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs6580124	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6879093	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs702743	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs73276760	0.85[EUR][1000 genomes]
rs73276766	0.85[EUR][1000 genomes]
rs73276769	0.85[EUR][1000 genomes]
rs73276780	0.85[EUR][1000 genomes]
rs73278805	0.85[EUR][1000 genomes]
rs73278819	0.85[EUR][1000 genomes]
rs73278843	0.85[EUR][1000 genomes]
rs73280717	0.85[EUR][1000 genomes]
rs73280724	0.85[EUR][1000 genomes]
rs73280726	0.85[EUR][1000 genomes]
rs73280747	0.85[EUR][1000 genomes]
rs73280749	0.85[EUR][1000 genomes]
rs73280750	0.85[EUR][1000 genomes]
rs73280761	0.95[EUR][1000 genomes]
rs73280762	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73280768	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73280770	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280778	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280785	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280786	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280788	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280792	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280795	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280797	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73282521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282523	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282527	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282530	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73282533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282539	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73282553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282555	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703040	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703386	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703765	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7719208	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7720538	0.85[EUR][1000 genomes]
rs7722783	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7722922	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7722949	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7723741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7724303	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7724660	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7733367	0.85[EUR][1000 genomes]
rs816715	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs816716	0.95[EUR][1000 genomes]
rs816724	0.89[EUR][1000 genomes]
rs816733	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs816736	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs816738	0.85[EUR][1000 genomes]
rs816739	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs816740	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs816742	0.85[EUR][1000 genomes]
rs816744	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs816745	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs816746	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs816748	1.00[CEU][hapmap]
rs863650	1.00[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883058	chr5:154375465-154432580	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154381400-154386400	Weak transcription	HepG2	liver
2	chr5:154381800-154382400	Enhancers	HMEC	breast
3	chr5:154381800-154382400	Enhancers	NHEK	skin
4	chr5:154382000-154382200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:154382000-154382400	Enhancers	A549	lung
6	chr5:154382000-154382800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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