Variant report

Variant	rs2544881
Chromosome Location	chr5:154264217-154264218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154236554..154241107-chr5:154261832..154268242,6	MCF-7	breast:
2	chr5:154236638..154239257-chr5:154260752..154264470,3	K562	blood:
3	chr5:154256944..154260356-chr5:154260971..154266243,8	K562	blood:

Variant related genes	Relation type
ENSG00000170271	Chromatin interaction
ENSG00000155508	Chromatin interaction

Extended variants
information (count: 155 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:155)

rs_ID	r²[population]
rs10042134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233077	0.88[ASN][1000 genomes]
rs13181649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390598	0.85[EUR][1000 genomes]
rs1390600	0.85[EUR][1000 genomes]
rs1390601	0.85[EUR][1000 genomes]
rs1390602	0.85[EUR][1000 genomes]
rs1390603	0.85[EUR][1000 genomes]
rs164192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164197	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs164198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs164199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17116671	0.86[EUR][1000 genomes]
rs17116677	0.85[EUR][1000 genomes]
rs17116679	0.85[EUR][1000 genomes]
rs17116683	0.85[EUR][1000 genomes]
rs17116701	0.85[EUR][1000 genomes]
rs17570361	0.85[EUR][1000 genomes]
rs180903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs184703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs185323	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs189439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2059045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2112219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2112222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544827	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544862	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544870	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544871	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544872	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544873	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544882	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544887	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs255530	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2560069	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2644745	1.00[ASN][1000 genomes]
rs2644747	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2644748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688183	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688185	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688192	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688202	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688209	1.00[ASN][1000 genomes]
rs32426	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348737	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348755	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3776982	1.00[ASN][1000 genomes]
rs39615	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs39953	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs40584	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958393	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958772	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4958774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58395756	0.85[EUR][1000 genomes]
rs59025588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59919514	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60476447	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60906140	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61511229	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61554631	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6580117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580118	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580124	0.85[EUR][1000 genomes]
rs6879093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276745	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276760	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73276766	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73276769	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73276780	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73278805	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73278819	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73278843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280761	0.90[EUR][1000 genomes]
rs73280762	0.90[EUR][1000 genomes]
rs73280768	0.90[EUR][1000 genomes]
rs73280770	0.85[EUR][1000 genomes]
rs73280778	0.85[EUR][1000 genomes]
rs73280785	0.85[EUR][1000 genomes]
rs73280786	0.85[EUR][1000 genomes]
rs73280788	0.85[EUR][1000 genomes]
rs73280792	0.85[EUR][1000 genomes]
rs73280795	0.85[EUR][1000 genomes]
rs73280797	0.81[EUR][1000 genomes]
rs73280799	0.85[EUR][1000 genomes]
rs73282508	0.85[EUR][1000 genomes]
rs73282513	0.85[EUR][1000 genomes]
rs73282516	0.85[EUR][1000 genomes]
rs73282519	0.85[EUR][1000 genomes]
rs73282521	0.85[EUR][1000 genomes]
rs73282523	0.85[EUR][1000 genomes]
rs73282525	0.85[EUR][1000 genomes]
rs73282527	0.85[EUR][1000 genomes]
rs73282528	0.85[EUR][1000 genomes]
rs73282533	0.85[EUR][1000 genomes]
rs73282538	0.85[EUR][1000 genomes]
rs73282539	0.85[EUR][1000 genomes]
rs73282553	0.85[EUR][1000 genomes]
rs73282555	0.85[EUR][1000 genomes]
rs73282558	0.85[EUR][1000 genomes]
rs7703040	0.85[EUR][1000 genomes]
rs7703227	0.85[EUR][1000 genomes]
rs7703386	0.85[EUR][1000 genomes]
rs7703765	0.85[EUR][1000 genomes]
rs7719208	0.85[EUR][1000 genomes]
rs7720521	0.94[ASN][1000 genomes]
rs7720538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7722949	0.85[EUR][1000 genomes]
rs7723741	0.85[EUR][1000 genomes]
rs7724303	0.85[EUR][1000 genomes]
rs7724660	0.85[EUR][1000 genomes]
rs7727176	0.81[EUR][1000 genomes]
rs7733367	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816715	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816716	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs816724	0.95[EUR][1000 genomes]
rs816725	0.85[EUR][1000 genomes]
rs816733	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816736	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs816739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816741	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs816742	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816744	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816748	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs863650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154240600-154264800	Weak transcription	Stomach Mucosa	stomach
2	chr5:154248600-154267600	Weak transcription	Right Atrium	heart
3	chr5:154255600-154266000	Weak transcription	NHLF	lung
4	chr5:154255800-154265000	Weak transcription	Brain Substantia Nigra	brain
5	chr5:154255800-154265200	Weak transcription	Fetal Kidney	kidney
6	chr5:154256000-154264800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr5:154256000-154265200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr5:154256000-154266000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr5:154256800-154264600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr5:154256800-154264800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr5:154256800-154265000	Weak transcription	K562	blood
12	chr5:154257000-154266000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr5:154257200-154265200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr5:154257600-154266000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr5:154258600-154264600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr5:154258800-154264600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr5:154258800-154264800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr5:154258800-154264800	Weak transcription	NHDF-Ad	bronchial
19	chr5:154258800-154265000	Weak transcription	Brain Angular Gyrus	brain
20	chr5:154258800-154265600	Weak transcription	Gastric	stomach
21	chr5:154258800-154265800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr5:154259000-154264400	Weak transcription	Osteobl	bone
23	chr5:154259000-154264600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr5:154259000-154264600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr5:154259000-154264800	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr5:154259000-154264800	Weak transcription	HepG2	liver
27	chr5:154259000-154265000	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr5:154259000-154265000	Weak transcription	Spleen	Spleen
29	chr5:154259000-154265000	Weak transcription	NH-A	brain
30	chr5:154259000-154265200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr5:154259000-154265200	Weak transcription	HSMMtube	muscle
32	chr5:154259000-154265400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr5:154259000-154265400	Weak transcription	Fetal Thymus	thymus
34	chr5:154259000-154265400	Weak transcription	Right Ventricle	heart
35	chr5:154259000-154265800	Weak transcription	Pancreas	Pancrea
36	chr5:154259200-154264400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr5:154259200-154264400	Weak transcription	Primary B cells from peripheral blood	blood
38	chr5:154259200-154264600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr5:154259200-154264800	Weak transcription	Brain Hippocampus Middle	brain
40	chr5:154259200-154265000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr5:154259200-154266000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr5:154259400-154265800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr5:154259400-154265800	Weak transcription	Colonic Mucosa	Colon
44	chr5:154259600-154264400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr5:154259600-154265000	Strong transcription	Brain Germinal Matrix	brain
46	chr5:154259800-154264600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr5:154259800-154264800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr5:154260600-154264400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr5:154261000-154264800	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr5:154261000-154265000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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