Variant report

Variant	rs73276745
Chromosome Location	chr5:154138890-154138891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154138655..154140454-chr5:154140669..154142332,2	MCF-7	breast:
2	chr5:154137877..154139979-chr5:154223259..154226183,2	MCF-7	breast:
3	chr5:154059219..154066449-chr5:154131053..154139153,28	MCF-7	breast:
4	chr5:154092276..154095550-chr5:154138420..154141730,4	MCF-7	breast:
5	chr5:154133224..154141155-chr5:154235246..154242227,24	MCF-7	breast:
6	chr5:154120475..154122431-chr5:154137952..154140710,2	K562	blood:

Variant related genes	Relation type
ENSG00000155506	Chromatin interaction
ENSG00000170271	Chromatin interaction
ENSG00000155508	Chromatin interaction
ENSG00000221552	Chromatin interaction

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10042134	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233077	0.88[ASN][1000 genomes]
rs13181649	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164192	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164193	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164194	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164196	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164198	0.81[EUR][1000 genomes]
rs164199	0.81[EUR][1000 genomes]
rs17116671	0.86[EUR][1000 genomes]
rs180903	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs184703	0.81[EUR][1000 genomes]
rs185323	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186998	0.81[EUR][1000 genomes]
rs189439	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2059045	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2112219	0.81[EUR][1000 genomes]
rs2112222	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544827	0.81[EUR][1000 genomes]
rs2544862	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544870	1.00[ASN][1000 genomes]
rs2544871	0.81[EUR][1000 genomes]
rs2544872	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544873	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544877	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544881	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544882	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544883	0.81[EUR][1000 genomes]
rs2544885	0.81[EUR][1000 genomes]
rs255530	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2560069	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2644745	1.00[ASN][1000 genomes]
rs2644748	0.81[EUR][1000 genomes]
rs2688183	1.00[ASN][1000 genomes]
rs2688185	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688192	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688202	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688209	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs32426	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346572	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346573	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348734	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348736	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348737	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348738	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348746	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348753	0.81[EUR][1000 genomes]
rs348755	0.81[EUR][1000 genomes]
rs348758	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3776982	1.00[ASN][1000 genomes]
rs39615	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs39953	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs40584	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958393	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958769	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958770	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958774	0.81[EUR][1000 genomes]
rs59025588	0.81[EUR][1000 genomes]
rs59919514	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60476447	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60906140	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61511229	1.00[ASN][1000 genomes]
rs61554631	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6580117	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580118	1.00[ASN][1000 genomes]
rs6580119	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580121	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6879093	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702743	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276760	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73276766	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73276769	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73276780	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73278805	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73278819	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73278843	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280717	0.81[EUR][1000 genomes]
rs73280724	0.81[EUR][1000 genomes]
rs73280726	0.81[EUR][1000 genomes]
rs73280747	0.81[EUR][1000 genomes]
rs73280749	0.81[EUR][1000 genomes]
rs73280750	0.81[EUR][1000 genomes]
rs73280761	0.90[EUR][1000 genomes]
rs73280762	0.90[EUR][1000 genomes]
rs73280768	0.90[EUR][1000 genomes]
rs73280770	0.85[EUR][1000 genomes]
rs73280778	0.85[EUR][1000 genomes]
rs7703765	0.85[EUR][1000 genomes]
rs7719208	0.85[EUR][1000 genomes]
rs7720521	0.94[ASN][1000 genomes]
rs7720538	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7723741	0.85[EUR][1000 genomes]
rs7727176	1.00[EUR][1000 genomes]
rs7733367	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816715	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816716	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs816733	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816736	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816737	1.00[ASN][1000 genomes]
rs816738	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs816739	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816740	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816742	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816744	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816745	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816746	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816748	1.00[ASN][1000 genomes]
rs863650	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021153	chr5:154099869-154147970	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154135800-154139600	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr5:154137200-154139600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:154137200-154139600	Weak transcription	Esophagus	oesophagus
4	chr5:154137200-154139600	Weak transcription	Left Ventricle	heart
5	chr5:154137200-154140000	Weak transcription	Gastric	stomach
6	chr5:154137200-154140800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:154137200-154142400	Enhancers	Primary B cells from peripheral blood	blood
8	chr5:154137400-154139000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
9	chr5:154137400-154139400	Enhancers	Stomach Mucosa	stomach
10	chr5:154137400-154141200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr5:154137600-154139000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:154137600-154139000	Flanking Active TSS	HepG2	liver
13	chr5:154137600-154139400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:154137600-154139600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr5:154137600-154139600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr5:154137600-154139600	Flanking Active TSS	Primary T cells from cord blood	blood
17	chr5:154137800-154139200	Flanking Active TSS	NHEK	skin
18	chr5:154137800-154139400	Enhancers	Brain Substantia Nigra	brain
19	chr5:154137800-154139600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr5:154137800-154139600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr5:154137800-154140600	Transcr. at gene 5' and 3'	K562	blood
22	chr5:154137800-154141400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr5:154137800-154144000	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr5:154138000-154139400	Enhancers	Fetal Stomach	stomach
25	chr5:154138000-154139400	Flanking Active TSS	GM12878-XiMat	blood
26	chr5:154138000-154139600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
27	chr5:154138000-154139600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr5:154138000-154139600	Weak transcription	Colonic Mucosa	Colon
29	chr5:154138000-154141000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr5:154138000-154141200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
31	chr5:154138000-154141400	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr5:154138000-154142000	Enhancers	Primary B cells from cord blood	blood
33	chr5:154138000-154142200	Enhancers	Liver	Liver
34	chr5:154138000-154142400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr5:154138000-154142400	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr5:154138000-154142600	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr5:154138200-154139000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr5:154138200-154139000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr5:154138200-154139000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr5:154138200-154139000	Enhancers	NH-A	brain
41	chr5:154138200-154139200	Enhancers	Fetal Brain Female	brain
42	chr5:154138200-154139400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr5:154138200-154139400	Enhancers	Fetal Lung	lung
44	chr5:154138200-154139400	Weak transcription	Pancreas	Pancrea
45	chr5:154138200-154139400	Weak transcription	Small Intestine	intestine
46	chr5:154138200-154139600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
47	chr5:154138200-154139600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr5:154138200-154139600	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr5:154138200-154139600	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr5:154138200-154139800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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