Variant report

Variant	rs4958774
Chromosome Location	chr5:154347984-154347985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154236951..154238944-chr5:154345833..154349110,3	MCF-7	breast:
2	chr5:154347106..154348977-chr5:154351843..154353596,2	MCF-7	breast:
3	chr5:154342000..154345250-chr5:154346858..154348980,3	MCF-7	breast:
4	chr5:154345809..154348149-chr5:154351585..154354397,2	K562	blood:
5	chr5:154346229..154348677-chr5:154350514..154352609,2	K562	blood:

Variant related genes	Relation type
ENSG00000170271	Chromatin interaction
ENSG00000155508	Chromatin interaction

Extended variants
information (count: 152 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:152)

rs_ID	r²[population]
rs10042134	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13181649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1390598	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1390600	0.85[EUR][1000 genomes]
rs1390601	0.85[EUR][1000 genomes]
rs1390602	0.85[EUR][1000 genomes]
rs1390603	0.85[EUR][1000 genomes]
rs164192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs164193	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs164194	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs164196	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs164197	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164198	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116671	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17116677	0.85[EUR][1000 genomes]
rs17116679	0.85[EUR][1000 genomes]
rs17116683	0.85[EUR][1000 genomes]
rs17116701	0.85[EUR][1000 genomes]
rs17570361	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs180903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs184703	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs185323	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs186998	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs189439	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2059045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2112219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2112220	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2112222	1.00[CEU][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544827	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2544862	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544870	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2544871	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544872	0.82[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544873	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544881	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544882	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544883	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544885	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544887	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255530	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2560069	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2644747	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2644748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688183	0.91[EUR][1000 genomes]
rs2688185	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688192	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688202	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs32426	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs346572	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs346573	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348734	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348736	1.00[CEU][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348737	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348738	1.00[CEU][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348740	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs348746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348753	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348755	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348758	1.00[CEU][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs39615	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs39953	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs40584	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4958393	1.00[EUR][1000 genomes]
rs4958769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4958770	1.00[CEU][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4958772	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58395756	0.85[EUR][1000 genomes]
rs59025588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59919514	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60476447	0.81[EUR][1000 genomes]
rs60906140	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61511229	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61554631	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6580117	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580118	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6580119	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580121	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580124	0.85[EUR][1000 genomes]
rs6879093	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs702743	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276745	0.81[EUR][1000 genomes]
rs73276760	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73276766	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73276769	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73276780	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73278805	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73278819	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73278843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280717	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280724	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280726	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73280747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280761	0.90[EUR][1000 genomes]
rs73280762	0.90[EUR][1000 genomes]
rs73280768	0.90[EUR][1000 genomes]
rs73280770	0.85[EUR][1000 genomes]
rs73280778	0.85[EUR][1000 genomes]
rs73280785	0.85[EUR][1000 genomes]
rs73280786	0.85[EUR][1000 genomes]
rs73280788	0.85[EUR][1000 genomes]
rs73280792	0.85[EUR][1000 genomes]
rs73280795	0.85[EUR][1000 genomes]
rs73280797	0.81[EUR][1000 genomes]
rs73280799	0.85[EUR][1000 genomes]
rs73282508	0.85[EUR][1000 genomes]
rs73282513	0.85[EUR][1000 genomes]
rs73282516	0.85[EUR][1000 genomes]
rs73282519	0.85[EUR][1000 genomes]
rs73282521	0.85[EUR][1000 genomes]
rs73282523	0.85[EUR][1000 genomes]
rs73282525	0.85[EUR][1000 genomes]
rs73282527	0.85[EUR][1000 genomes]
rs73282528	0.85[EUR][1000 genomes]
rs73282533	0.85[EUR][1000 genomes]
rs73282538	0.85[EUR][1000 genomes]
rs73282539	0.85[EUR][1000 genomes]
rs73282553	0.85[EUR][1000 genomes]
rs73282555	0.85[EUR][1000 genomes]
rs73282558	0.85[EUR][1000 genomes]
rs7703040	0.85[EUR][1000 genomes]
rs7703227	0.85[EUR][1000 genomes]
rs7703386	0.85[EUR][1000 genomes]
rs7703765	0.85[EUR][1000 genomes]
rs7719208	0.85[EUR][1000 genomes]
rs7720538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7722949	0.85[EUR][1000 genomes]
rs7723741	0.85[EUR][1000 genomes]
rs7724303	0.85[EUR][1000 genomes]
rs7724660	0.85[EUR][1000 genomes]
rs7727176	0.81[EUR][1000 genomes]
rs7733367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816715	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816716	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs816724	0.95[EUR][1000 genomes]
rs816725	0.85[EUR][1000 genomes]
rs816733	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816736	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816737	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs816738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816739	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816740	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816741	0.81[AMR][1000 genomes]
rs816742	1.00[EUR][1000 genomes]
rs816744	1.00[CEU][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816745	1.00[CEU][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816746	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816748	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs863650	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154321800-154352200	Weak transcription	Right Ventricle	heart
2	chr5:154322000-154350000	Weak transcription	Fetal Brain Male	brain
3	chr5:154322400-154349600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:154322600-154364600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:154327600-154351600	Weak transcription	Fetal Heart	heart
6	chr5:154335600-154350600	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr5:154335800-154348000	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr5:154335800-154348400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr5:154335800-154349000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:154336000-154349000	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr5:154336000-154349400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr5:154336200-154348800	Strong transcription	Fetal Intestine Large	intestine
13	chr5:154336200-154349000	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr5:154336200-154349400	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr5:154336600-154348800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:154336800-154350600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:154337600-154348000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr5:154338400-154351800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr5:154339200-154350400	Weak transcription	Esophagus	oesophagus
20	chr5:154339200-154355400	Weak transcription	Gastric	stomach
21	chr5:154339200-154361200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr5:154339400-154350400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr5:154339400-154355400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr5:154339400-154355400	Weak transcription	Pancreas	Pancrea
25	chr5:154339400-154355600	Weak transcription	Lung	lung
26	chr5:154339600-154349800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr5:154339600-154356200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr5:154340200-154357200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr5:154341400-154366600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr5:154341600-154348200	Weak transcription	Left Ventricle	heart
31	chr5:154341600-154349600	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr5:154342000-154348000	Weak transcription	Fetal Kidney	kidney
33	chr5:154342400-154349400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr5:154342600-154348000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr5:154342800-154363400	Weak transcription	Brain Germinal Matrix	brain
36	chr5:154343000-154348800	Strong transcription	Primary T cells from cord blood	blood
37	chr5:154343400-154356800	Weak transcription	Hela-S3	cervix
38	chr5:154343600-154349400	Strong transcription	Fetal Muscle Leg	muscle
39	chr5:154344200-154348800	Strong transcription	Fetal Lung	lung
40	chr5:154344800-154356400	Weak transcription	HMEC	breast
41	chr5:154345000-154348800	Strong transcription	Fetal Muscle Trunk	muscle
42	chr5:154345000-154357000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr5:154345200-154348000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr5:154345200-154348800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr5:154345200-154348800	Strong transcription	Fetal Thymus	thymus
46	chr5:154345200-154349000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr5:154345400-154348000	Strong transcription	Dnd41	blood
48	chr5:154345400-154348200	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr5:154345400-154348400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr5:154345400-154348400	Strong transcription	Duodenum Smooth Muscle	Duodenum

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