Variant report

Variant	rs816741
Chromosome Location	chr5:154277539-154277540
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154237323..154239317-chr5:154277383..154279803,2	K562	blood:
2	chr5:154237688..154239228-chr5:154275528..154278504,2	MCF-7	breast:
3	chr5:154276032..154278866-chr5:154306482..154309276,2	K562	blood:

Variant related genes	Relation type
ENSG00000155508	Chromatin interaction
ENSG00000170271	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10042134	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs13181649	0.81[AMR][1000 genomes]
rs164192	0.81[AMR][1000 genomes]
rs164193	0.81[AMR][1000 genomes]
rs164194	0.81[AMR][1000 genomes]
rs164196	0.81[AMR][1000 genomes]
rs164197	0.81[AMR][1000 genomes]
rs164198	0.81[AMR][1000 genomes]
rs164199	0.81[AMR][1000 genomes]
rs180903	0.81[AMR][1000 genomes]
rs184703	0.81[AMR][1000 genomes]
rs186998	0.81[AMR][1000 genomes]
rs189439	0.81[AMR][1000 genomes]
rs2059045	0.81[AMR][1000 genomes]
rs2112219	0.81[AMR][1000 genomes]
rs2112222	0.81[AMR][1000 genomes]
rs2544871	0.81[AMR][1000 genomes]
rs2544877	0.81[AMR][1000 genomes]
rs2544881	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2544883	0.81[AMR][1000 genomes]
rs2544885	0.81[AMR][1000 genomes]
rs2644747	0.81[AMR][1000 genomes]
rs2644748	0.81[AMR][1000 genomes]
rs2688185	0.86[AFR][1000 genomes]
rs346572	0.81[AMR][1000 genomes]
rs346573	0.81[AMR][1000 genomes]
rs348734	0.81[AMR][1000 genomes]
rs348736	0.81[AMR][1000 genomes]
rs348737	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs348738	0.81[AMR][1000 genomes]
rs348746	0.81[AMR][1000 genomes]
rs348753	0.81[AMR][1000 genomes]
rs348755	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs348758	0.81[AMR][1000 genomes]
rs4958769	0.81[AMR][1000 genomes]
rs4958770	0.81[AMR][1000 genomes]
rs4958772	0.81[AMR][1000 genomes]
rs4958774	0.81[AMR][1000 genomes]
rs59025588	0.81[AMR][1000 genomes]
rs61511229	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6580117	0.81[AMR][1000 genomes]
rs6580118	0.81[AMR][1000 genomes]
rs6580119	0.81[AMR][1000 genomes]
rs6580121	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6879093	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs702743	0.81[AMR][1000 genomes]
rs73278843	0.81[AMR][1000 genomes]
rs73280717	0.81[AMR][1000 genomes]
rs73280724	0.81[AMR][1000 genomes]
rs73280726	0.81[AMR][1000 genomes]
rs73280747	0.81[AMR][1000 genomes]
rs73280749	0.81[AMR][1000 genomes]
rs73280750	0.81[AMR][1000 genomes]
rs7720538	0.81[AMR][1000 genomes]
rs7733367	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs816736	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs816737	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs816738	0.81[AMR][1000 genomes]
rs816739	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs816740	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs816744	0.81[AMR][1000 genomes]
rs816745	0.81[AMR][1000 genomes]
rs816746	0.81[AMR][1000 genomes]
rs816748	0.81[AMR][1000 genomes]
rs863650	0.81[AMR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154262800-154300800	Strong transcription	Fetal Brain Female	brain
2	chr5:154264000-154312800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:154265200-154278000	Strong transcription	Fetal Muscle Trunk	muscle
4	chr5:154265200-154279800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:154266200-154285000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr5:154266200-154287600	Strong transcription	HepG2	liver
7	chr5:154266200-154288800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr5:154266200-154312200	Strong transcription	Fetal Thymus	thymus
9	chr5:154266200-154316600	Weak transcription	Stomach Mucosa	stomach
10	chr5:154266400-154278200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:154266400-154278800	Strong transcription	H9 Cell Line	embryonic stem cell
12	chr5:154266400-154293600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:154266400-154311200	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr5:154266400-154312800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr5:154266400-154315600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:154266600-154282800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:154266600-154283600	Strong transcription	K562	blood
18	chr5:154266600-154284200	Strong transcription	Brain Germinal Matrix	brain
19	chr5:154266600-154285000	Strong transcription	Thymus	Thymus
20	chr5:154266600-154292600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr5:154266600-154292800	Strong transcription	Left Ventricle	heart
22	chr5:154266600-154293000	Strong transcription	Dnd41	blood
23	chr5:154266600-154293200	Strong transcription	Placenta	Placenta
24	chr5:154266600-154294600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:154266600-154312800	Strong transcription	Fetal Intestine Large	intestine
26	chr5:154266600-154313200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr5:154266600-154313600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr5:154266800-154278800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr5:154266800-154285200	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr5:154266800-154293000	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr5:154266800-154293600	Strong transcription	Stomach Smooth Muscle	stomach
32	chr5:154267000-154293600	Strong transcription	Primary T cells from cord blood	blood
33	chr5:154267000-154294400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr5:154267000-154304400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr5:154267000-154312800	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr5:154267200-154287400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr5:154267200-154293000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr5:154267200-154311800	Strong transcription	Primary B cells from peripheral blood	blood
39	chr5:154267200-154312800	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr5:154267400-154299000	Strong transcription	Fetal Stomach	stomach
41	chr5:154267600-154278800	Strong transcription	Liver	Liver
42	chr5:154267600-154279000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
43	chr5:154267600-154300000	Strong transcription	Fetal Muscle Leg	muscle
44	chr5:154267600-154301600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr5:154267600-154313200	Strong transcription	Duodenum Mucosa	Duodenum
46	chr5:154267800-154315600	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr5:154268000-154282800	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr5:154268000-154283800	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr5:154268000-154296600	Weak transcription	Right Atrium	heart
50	chr5:154268000-154315600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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