Variant report

Variant	rs61511229
Chromosome Location	chr5:154263598-154263599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154236554..154241107-chr5:154261832..154268242,6	MCF-7	breast:
2	chr5:154236638..154239257-chr5:154260752..154264470,3	K562	blood:
3	chr5:154256944..154260356-chr5:154260971..154266243,8	K562	blood:
4	chr5:154257449..154260221-chr5:154262171..154263946,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CNOT8-1	chr5:154262715-154263999	XLOC_004611

Variant related genes	Relation type
ENSG00000155508	Chromatin interaction
ENSG00000170271	Chromatin interaction

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10042134	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233077	0.88[ASN][1000 genomes]
rs13181649	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164192	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164193	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164194	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164196	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164197	1.00[AMR][1000 genomes]
rs164198	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs164199	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs180903	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs184703	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs185323	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186998	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs189439	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2059045	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2112219	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2112222	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544827	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2544862	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544870	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544871	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2544872	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544873	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544877	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544881	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544882	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544883	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2544885	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2544887	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs255530	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2560069	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2644745	1.00[ASN][1000 genomes]
rs2644747	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2644748	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2688183	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688185	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688192	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688202	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688209	1.00[ASN][1000 genomes]
rs32426	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346572	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346573	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348734	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348736	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348737	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348738	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348746	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348753	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs348755	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs348758	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3776982	1.00[ASN][1000 genomes]
rs39615	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs39953	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs40584	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958393	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958769	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958770	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958772	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4958774	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59025588	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59919514	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs60476447	1.00[ASN][1000 genomes]
rs60906140	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61554631	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6580117	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580118	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580119	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580121	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6879093	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702743	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276745	1.00[ASN][1000 genomes]
rs73276760	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73276766	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73276769	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73276780	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73278805	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73278819	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73278843	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280717	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73280724	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73280726	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73280747	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73280749	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73280750	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73280761	0.82[EUR][1000 genomes]
rs73280762	0.82[EUR][1000 genomes]
rs73280768	0.82[EUR][1000 genomes]
rs7720521	0.94[ASN][1000 genomes]
rs7720538	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7733367	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816715	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816716	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs816724	0.86[EUR][1000 genomes]
rs816733	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816736	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816737	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816738	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs816739	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816740	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816741	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs816742	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816744	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816745	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816746	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816748	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs863650	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154239600-154263800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:154240600-154264800	Weak transcription	Stomach Mucosa	stomach
3	chr5:154248600-154267600	Weak transcription	Right Atrium	heart
4	chr5:154252200-154264200	Weak transcription	Fetal Heart	heart
5	chr5:154255600-154266000	Weak transcription	NHLF	lung
6	chr5:154255800-154264200	Weak transcription	Fetal Brain Male	brain
7	chr5:154255800-154265000	Weak transcription	Brain Substantia Nigra	brain
8	chr5:154255800-154265200	Weak transcription	Fetal Kidney	kidney
9	chr5:154256000-154264800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr5:154256000-154265200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr5:154256000-154266000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:154256800-154264600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr5:154256800-154264800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr5:154256800-154265000	Weak transcription	K562	blood
15	chr5:154257000-154266000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr5:154257200-154265200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr5:154257600-154266000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr5:154258600-154264000	Weak transcription	Psoas Muscle	Psoas
19	chr5:154258600-154264600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr5:154258800-154264000	Weak transcription	A549	lung
21	chr5:154258800-154264600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr5:154258800-154264800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr5:154258800-154264800	Weak transcription	NHDF-Ad	bronchial
24	chr5:154258800-154265000	Weak transcription	Brain Angular Gyrus	brain
25	chr5:154258800-154265600	Weak transcription	Gastric	stomach
26	chr5:154258800-154265800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr5:154259000-154264000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr5:154259000-154264000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr5:154259000-154264000	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr5:154259000-154264000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr5:154259000-154264000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr5:154259000-154264000	Weak transcription	Fetal Lung	lung
33	chr5:154259000-154264000	Weak transcription	Fetal Stomach	stomach
34	chr5:154259000-154264000	Weak transcription	Ovary	ovary
35	chr5:154259000-154264000	Weak transcription	HSMM	muscle
36	chr5:154259000-154264200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr5:154259000-154264200	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr5:154259000-154264200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr5:154259000-154264200	Weak transcription	Aorta	Aorta
40	chr5:154259000-154264200	Weak transcription	Brain Anterior Caudate	brain
41	chr5:154259000-154264200	Weak transcription	Lung	lung
42	chr5:154259000-154264200	Weak transcription	Dnd41	blood
43	chr5:154259000-154264200	Weak transcription	GM12878-XiMat	blood
44	chr5:154259000-154264400	Weak transcription	Osteobl	bone
45	chr5:154259000-154264600	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr5:154259000-154264600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr5:154259000-154264800	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr5:154259000-154264800	Weak transcription	HepG2	liver
49	chr5:154259000-154265000	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr5:154259000-154265000	Weak transcription	Spleen	Spleen

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