Variant report

Variant	rs73280750
Chromosome Location	chr5:154365653-154365654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 150 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:150)

rs_ID	r²[population]
rs10042134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13181649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1390598	0.85[EUR][1000 genomes]
rs1390600	0.85[EUR][1000 genomes]
rs1390601	0.85[EUR][1000 genomes]
rs1390602	0.85[EUR][1000 genomes]
rs1390603	0.85[EUR][1000 genomes]
rs164192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs164193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs164194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs164196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs164197	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs164198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs164199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17116671	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17116677	0.85[EUR][1000 genomes]
rs17116679	0.85[EUR][1000 genomes]
rs17116683	0.85[EUR][1000 genomes]
rs17116701	0.85[EUR][1000 genomes]
rs17570361	0.85[EUR][1000 genomes]
rs180903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs184703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs185323	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs186998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs189439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2059045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2112219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2112222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544827	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544862	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544870	0.90[EUR][1000 genomes]
rs2544871	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544872	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544873	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544881	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544882	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544887	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs255530	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2560069	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2644747	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2644748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688183	0.91[EUR][1000 genomes]
rs2688185	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688192	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688202	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs32426	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs346572	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs346573	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs39615	0.90[EUR][1000 genomes]
rs39953	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs40584	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4958393	1.00[EUR][1000 genomes]
rs4958769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4958770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4958772	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4958774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58395756	0.85[EUR][1000 genomes]
rs59025588	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59919514	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60476447	0.81[EUR][1000 genomes]
rs60906140	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61511229	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61554631	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6580117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580118	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6580119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580124	0.85[EUR][1000 genomes]
rs6879093	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs702743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276745	0.81[EUR][1000 genomes]
rs73276760	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73276766	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73276769	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73276780	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73278805	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73278819	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73278843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280747	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280749	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280761	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73280762	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73280768	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73280770	0.85[EUR][1000 genomes]
rs73280778	0.85[EUR][1000 genomes]
rs73280785	0.85[EUR][1000 genomes]
rs73280786	0.85[EUR][1000 genomes]
rs73280788	0.85[EUR][1000 genomes]
rs73280792	0.85[EUR][1000 genomes]
rs73280795	0.85[EUR][1000 genomes]
rs73280797	0.81[EUR][1000 genomes]
rs73280799	0.85[EUR][1000 genomes]
rs73282508	0.85[EUR][1000 genomes]
rs73282513	0.85[EUR][1000 genomes]
rs73282516	0.85[EUR][1000 genomes]
rs73282519	0.85[EUR][1000 genomes]
rs73282521	0.85[EUR][1000 genomes]
rs73282523	0.85[EUR][1000 genomes]
rs73282525	0.85[EUR][1000 genomes]
rs73282527	0.85[EUR][1000 genomes]
rs73282528	0.85[EUR][1000 genomes]
rs73282533	0.85[EUR][1000 genomes]
rs73282538	0.85[EUR][1000 genomes]
rs73282539	0.85[EUR][1000 genomes]
rs73282553	0.85[EUR][1000 genomes]
rs73282555	0.85[EUR][1000 genomes]
rs73282558	0.85[EUR][1000 genomes]
rs7703040	0.85[EUR][1000 genomes]
rs7703227	0.85[EUR][1000 genomes]
rs7703386	0.85[EUR][1000 genomes]
rs7703765	0.85[EUR][1000 genomes]
rs7719208	0.85[EUR][1000 genomes]
rs7720538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7722949	0.85[EUR][1000 genomes]
rs7723741	0.85[EUR][1000 genomes]
rs7724303	0.85[EUR][1000 genomes]
rs7724660	0.85[EUR][1000 genomes]
rs7727176	0.81[EUR][1000 genomes]
rs7733367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816715	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816716	0.90[EUR][1000 genomes]
rs816724	0.95[EUR][1000 genomes]
rs816725	0.85[EUR][1000 genomes]
rs816733	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816737	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs816738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816739	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816740	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816741	0.81[AMR][1000 genomes]
rs816742	1.00[EUR][1000 genomes]
rs816744	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816748	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs863650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154341400-154366600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:154365000-154372400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:154365200-154366200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links