Variant report

Variant	rs73280788
Chromosome Location	chr5:154379393-154379394
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 146 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:144)

rs_ID	r²[population]
rs10042134	0.85[EUR][1000 genomes]
rs13181649	0.85[EUR][1000 genomes]
rs1390598	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390601	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390602	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390603	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164192	0.85[EUR][1000 genomes]
rs164193	0.85[EUR][1000 genomes]
rs164194	0.85[EUR][1000 genomes]
rs164196	0.85[EUR][1000 genomes]
rs164198	0.85[EUR][1000 genomes]
rs164199	0.85[EUR][1000 genomes]
rs17116671	0.90[EUR][1000 genomes]
rs17116677	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116679	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116683	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116698	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116701	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17570361	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs180903	0.85[EUR][1000 genomes]
rs184703	0.85[EUR][1000 genomes]
rs185323	0.85[EUR][1000 genomes]
rs186998	0.85[EUR][1000 genomes]
rs189439	0.85[EUR][1000 genomes]
rs2059045	0.85[EUR][1000 genomes]
rs2112219	0.85[EUR][1000 genomes]
rs2112222	0.85[EUR][1000 genomes]
rs2544827	0.85[EUR][1000 genomes]
rs2544862	0.85[EUR][1000 genomes]
rs2544871	0.85[EUR][1000 genomes]
rs2544872	0.85[EUR][1000 genomes]
rs2544873	0.85[EUR][1000 genomes]
rs2544877	0.85[EUR][1000 genomes]
rs2544881	0.85[EUR][1000 genomes]
rs2544882	0.85[EUR][1000 genomes]
rs2544883	0.85[EUR][1000 genomes]
rs2544885	0.85[EUR][1000 genomes]
rs255530	0.85[EUR][1000 genomes]
rs2560069	0.85[EUR][1000 genomes]
rs2644748	0.85[EUR][1000 genomes]
rs2688185	0.85[EUR][1000 genomes]
rs2688192	0.85[EUR][1000 genomes]
rs2688202	0.85[EUR][1000 genomes]
rs32426	0.85[EUR][1000 genomes]
rs346572	0.85[EUR][1000 genomes]
rs346573	0.85[EUR][1000 genomes]
rs348734	0.85[EUR][1000 genomes]
rs348736	0.85[EUR][1000 genomes]
rs348737	0.85[EUR][1000 genomes]
rs348738	0.85[EUR][1000 genomes]
rs348746	0.85[EUR][1000 genomes]
rs348753	0.85[EUR][1000 genomes]
rs348755	0.85[EUR][1000 genomes]
rs348758	0.85[EUR][1000 genomes]
rs39615	0.95[EUR][1000 genomes]
rs39953	0.95[EUR][1000 genomes]
rs40584	0.85[EUR][1000 genomes]
rs4958393	0.85[EUR][1000 genomes]
rs4958769	0.85[EUR][1000 genomes]
rs4958770	0.85[EUR][1000 genomes]
rs4958772	0.81[EUR][1000 genomes]
rs4958774	0.85[EUR][1000 genomes]
rs58395756	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59025588	0.85[EUR][1000 genomes]
rs59919514	0.85[EUR][1000 genomes]
rs60906140	0.85[EUR][1000 genomes]
rs61386671	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61554631	0.85[EUR][1000 genomes]
rs6580117	0.85[EUR][1000 genomes]
rs6580119	0.85[EUR][1000 genomes]
rs6580121	0.85[EUR][1000 genomes]
rs6580124	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6879093	0.85[EUR][1000 genomes]
rs702743	0.85[EUR][1000 genomes]
rs73276760	0.85[EUR][1000 genomes]
rs73276766	0.85[EUR][1000 genomes]
rs73276769	0.85[EUR][1000 genomes]
rs73276780	0.85[EUR][1000 genomes]
rs73278805	0.85[EUR][1000 genomes]
rs73278819	0.85[EUR][1000 genomes]
rs73278843	0.85[EUR][1000 genomes]
rs73280717	0.85[EUR][1000 genomes]
rs73280724	0.85[EUR][1000 genomes]
rs73280726	0.85[EUR][1000 genomes]
rs73280747	0.85[EUR][1000 genomes]
rs73280749	0.85[EUR][1000 genomes]
rs73280750	0.85[EUR][1000 genomes]
rs73280761	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73280762	0.95[EUR][1000 genomes]
rs73280768	0.95[EUR][1000 genomes]
rs73280770	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280778	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280780	0.84[AFR][1000 genomes]
rs73280785	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280786	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280792	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280795	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280797	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280799	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282508	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282516	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282519	1.00[EUR][1000 genomes]
rs73282521	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282522	0.90[EUR][1000 genomes]
rs73282523	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282525	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282527	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282528	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282530	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73282533	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282538	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282539	1.00[EUR][1000 genomes]
rs73282553	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282555	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282558	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703040	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703227	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703386	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703765	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7719208	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7720538	0.85[EUR][1000 genomes]
rs7722783	0.83[ASN][1000 genomes]
rs7722922	0.83[ASN][1000 genomes]
rs7722949	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7723741	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7724303	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7724660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7727176	0.85[EUR][1000 genomes]
rs7733367	0.85[EUR][1000 genomes]
rs816715	0.85[EUR][1000 genomes]
rs816716	0.95[EUR][1000 genomes]
rs816724	0.89[EUR][1000 genomes]
rs816733	0.85[EUR][1000 genomes]
rs816736	0.85[EUR][1000 genomes]
rs816738	0.85[EUR][1000 genomes]
rs816739	0.85[EUR][1000 genomes]
rs816740	0.85[EUR][1000 genomes]
rs816742	0.85[EUR][1000 genomes]
rs816744	0.85[EUR][1000 genomes]
rs816745	0.85[EUR][1000 genomes]
rs816746	0.85[EUR][1000 genomes]
rs863650	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv968117	chr5:154371654-154381973	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	nsv883058	chr5:154375465-154432580	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154375600-154380400	Weak transcription	HepG2	liver
2	chr5:154377800-154381200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:154377800-154381800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:154377800-154381800	Weak transcription	HMEC	breast
5	chr5:154377800-154381800	Weak transcription	NHEK	skin

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