Variant report

Variant	rs32426
Chromosome Location	chr5:154201509-154201510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154200593..154202575-chr5:154235203..154237824,2	MCF-7	breast:
2	chr5:154200242..154202597-chr5:154233414..154235052,2	K562	blood:
3	chr5:154200501..154205115-chr5:154206575..154209973,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155508	Chromatin interaction
ENSG00000263361	Chromatin interaction

Extended variants
information (count: 155 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs10042134	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233077	0.88[ASN][1000 genomes]
rs13181649	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390598	0.85[EUR][1000 genomes]
rs1390600	0.85[EUR][1000 genomes]
rs1390601	0.85[EUR][1000 genomes]
rs1390602	0.85[EUR][1000 genomes]
rs1390603	0.85[EUR][1000 genomes]
rs164192	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164193	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164194	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164196	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164197	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs164198	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs164199	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17116671	0.86[EUR][1000 genomes]
rs17116677	0.85[EUR][1000 genomes]
rs17116679	0.85[EUR][1000 genomes]
rs17116683	0.85[EUR][1000 genomes]
rs17116701	0.85[EUR][1000 genomes]
rs17570361	0.85[EUR][1000 genomes]
rs180903	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs184703	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs185323	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186998	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs189439	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2059045	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2112219	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2112222	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544827	1.00[EUR][1000 genomes]
rs2544862	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544870	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544871	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544872	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544873	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544877	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544881	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544882	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544883	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544885	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544887	0.90[EUR][1000 genomes]
rs255530	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2560069	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2644745	1.00[ASN][1000 genomes]
rs2644747	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2644748	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688183	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688185	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688192	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688209	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs346572	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346573	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348734	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348736	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348737	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348738	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348746	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348753	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348755	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348758	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3776982	1.00[ASN][1000 genomes]
rs39615	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs39953	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs40584	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958393	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958769	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958770	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958772	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4958774	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58395756	0.85[EUR][1000 genomes]
rs59025588	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59919514	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60476447	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60906140	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61511229	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61554631	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6580117	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580118	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580119	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580121	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580124	0.85[EUR][1000 genomes]
rs6879093	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702743	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276745	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276760	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73276766	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73276769	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73276780	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73278805	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73278819	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73278843	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280717	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280724	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280726	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280747	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280749	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280750	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280761	0.90[EUR][1000 genomes]
rs73280762	0.90[EUR][1000 genomes]
rs73280768	0.90[EUR][1000 genomes]
rs73280770	0.85[EUR][1000 genomes]
rs73280778	0.85[EUR][1000 genomes]
rs73280785	0.85[EUR][1000 genomes]
rs73280786	0.85[EUR][1000 genomes]
rs73280788	0.85[EUR][1000 genomes]
rs73280792	0.85[EUR][1000 genomes]
rs73280795	0.85[EUR][1000 genomes]
rs73280797	0.81[EUR][1000 genomes]
rs73280799	0.85[EUR][1000 genomes]
rs73282508	0.85[EUR][1000 genomes]
rs73282513	0.85[EUR][1000 genomes]
rs73282516	0.85[EUR][1000 genomes]
rs73282519	0.85[EUR][1000 genomes]
rs73282521	0.85[EUR][1000 genomes]
rs73282523	0.85[EUR][1000 genomes]
rs73282525	0.85[EUR][1000 genomes]
rs73282527	0.85[EUR][1000 genomes]
rs73282528	0.85[EUR][1000 genomes]
rs73282533	0.85[EUR][1000 genomes]
rs73282538	0.85[EUR][1000 genomes]
rs73282539	0.85[EUR][1000 genomes]
rs73282553	0.85[EUR][1000 genomes]
rs73282555	0.85[EUR][1000 genomes]
rs73282558	0.85[EUR][1000 genomes]
rs7703040	0.85[EUR][1000 genomes]
rs7703227	0.85[EUR][1000 genomes]
rs7703386	0.85[EUR][1000 genomes]
rs7703765	0.85[EUR][1000 genomes]
rs7719208	0.85[EUR][1000 genomes]
rs7720521	0.94[ASN][1000 genomes]
rs7720538	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7722949	0.85[EUR][1000 genomes]
rs7723741	0.85[EUR][1000 genomes]
rs7724303	0.85[EUR][1000 genomes]
rs7724660	0.85[EUR][1000 genomes]
rs7727176	0.81[EUR][1000 genomes]
rs7733367	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816715	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816716	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs816724	0.95[EUR][1000 genomes]
rs816725	0.85[EUR][1000 genomes]
rs816733	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816736	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816737	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816738	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs816739	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816740	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816742	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816744	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816745	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816746	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816748	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs863650	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830521	chr5:154147567-154244266	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154167000-154203000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:154169200-154204200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:154169200-154204200	Strong transcription	Dnd41	blood
4	chr5:154169400-154204000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:154169400-154204200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:154169400-154204200	Strong transcription	Duodenum Mucosa	Duodenum
7	chr5:154169400-154205800	Strong transcription	Skeletal Muscle Female	skeletal muscle
8	chr5:154169600-154202400	Strong transcription	Rectal Mucosa Donor 31	rectum
9	chr5:154169600-154204200	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr5:154174000-154212200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:154174800-154204400	Strong transcription	Placenta	Placenta
12	chr5:154175200-154204400	Strong transcription	Osteobl	bone
13	chr5:154175200-154204600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr5:154177200-154202200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:154178200-154204000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:154181000-154211600	Strong transcription	Brain Hippocampus Middle	brain
17	chr5:154181200-154204800	Strong transcription	Brain Cingulate Gyrus	brain
18	chr5:154182000-154211400	Strong transcription	Left Ventricle	heart
19	chr5:154187000-154211400	Strong transcription	Fetal Stomach	stomach
20	chr5:154187600-154204200	Strong transcription	Skeletal Muscle Male	skeletal muscle
21	chr5:154187600-154204400	Strong transcription	Brain Germinal Matrix	brain
22	chr5:154188600-154202400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:154189400-154206000	Strong transcription	Sigmoid Colon	Sigmoid Colon
24	chr5:154189800-154204600	Strong transcription	Lung	lung
25	chr5:154190400-154204200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr5:154191600-154208600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr5:154191800-154206200	Strong transcription	Brain Anterior Caudate	brain
28	chr5:154191800-154211600	Strong transcription	Adipose Nuclei	Adipose
29	chr5:154192400-154204200	Strong transcription	Brain Substantia Nigra	brain
30	chr5:154193000-154211800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr5:154193800-154204200	Strong transcription	Fetal Thymus	thymus
32	chr5:154194000-154209400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr5:154195600-154204600	Strong transcription	A549	lung
34	chr5:154195600-154208000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr5:154195600-154214400	Weak transcription	Small Intestine	intestine
36	chr5:154195800-154201800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr5:154195800-154201800	Strong transcription	HepG2	liver
38	chr5:154196000-154203600	Strong transcription	Liver	Liver
39	chr5:154196000-154229200	Weak transcription	Psoas Muscle	Psoas
40	chr5:154196400-154214000	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr5:154196600-154208000	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr5:154196800-154203000	Weak transcription	Stomach Mucosa	stomach
43	chr5:154196800-154207400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr5:154197000-154204200	Strong transcription	Brain Angular Gyrus	brain
45	chr5:154197200-154201800	Strong transcription	Fetal Lung	lung
46	chr5:154197400-154202000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr5:154197400-154203600	Weak transcription	NH-A	brain
48	chr5:154197600-154203400	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr5:154197600-154208400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr5:154197600-154214400	Weak transcription	HUVEC	blood vessel

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