The 2.0 version of rSNPBase

Variant report

Variant rs2688183
Chromosome Location chr5:154206102-154206103
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:154174000-154212200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
2 chr5:154181000-154211600 Strong transcription Brain Hippocampus Middle brain
3 chr5:154182000-154211400 Strong transcription Left Ventricle heart
4 chr5:154187000-154211400 Strong transcription Fetal Stomach stomach
5 chr5:154191600-154208600 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
6 chr5:154191800-154206200 Strong transcription Brain Anterior Caudate brain
7 chr5:154191800-154211600 Strong transcription Adipose Nuclei Adipose
8 chr5:154193000-154211800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
9 chr5:154194000-154209400 Strong transcription Breast Myoepithelial Primary Cells Breast
10 chr5:154195600-154208000 Weak transcription Primary T helper naive cells from peripheral blood blood
11 chr5:154195600-154214400 Weak transcription Small Intestine intestine
12 chr5:154196000-154229200 Weak transcription Psoas Muscle Psoas
13 chr5:154196400-154214000 Weak transcription Pancreatic Islets Pancreatic Islet
14 chr5:154196600-154208000 Weak transcription Placenta Amnion Placenta Amnion
15 chr5:154196800-154207400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
16 chr5:154197600-154208400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
17 chr5:154197600-154214400 Weak transcription HUVEC blood vessel
18 chr5:154197800-154214400 Weak transcription Hela-S3 cervix
19 chr5:154198400-154207200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr5:154198600-154206400 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
21 chr5:154198600-154211200 Strong transcription Stomach Smooth Muscle stomach
22 chr5:154198600-154211400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
23 chr5:154199400-154207600 Weak transcription Primary T killer memory cells from peripheral blood blood
24 chr5:154199400-154209000 Weak transcription iPS-18 Cell Line embryonic stem cell
25 chr5:154199400-154214400 Weak transcription Right Atrium heart
26 chr5:154200200-154209200 Strong transcription Fetal Muscle Trunk muscle
27 chr5:154200200-154214400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr5:154200400-154209000 Weak transcription Primary B cells from cord blood blood
29 chr5:154200800-154214000 Weak transcription Fetal Heart heart
30 chr5:154201000-154207400 Weak transcription Fetal Kidney kidney
31 chr5:154201000-154228000 Weak transcription Fetal Brain Male brain
32 chr5:154201200-154208600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
33 chr5:154202400-154208000 Weak transcription Rectal Mucosa Donor 31 rectum
34 chr5:154202400-154208800 Strong transcription Fetal Muscle Leg muscle
35 chr5:154203200-154207400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
36 chr5:154203400-154208800 Weak transcription Colonic Mucosa Colon
37 chr5:154203400-154209000 Weak transcription Stomach Mucosa stomach
38 chr5:154203400-154229000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
39 chr5:154203600-154207200 Weak transcription Primary T helper naive cells fromperipheralblood blood
40 chr5:154203600-154214400 Weak transcription iPS-15b Cell Line embryonic stem cell
41 chr5:154203800-154206800 Weak transcription HMEC breast
42 chr5:154203800-154208000 Weak transcription HUES48 Cell Line embryonic stem cell
43 chr5:154203800-154208400 Weak transcription Primary T regulatory cells fromperipheralblood blood
44 chr5:154203800-154210600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
45 chr5:154203800-154211400 Strong transcription Fetal Adrenal Gland Adrenal Gland
46 chr5:154204000-154207200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr5:154204000-154207200 Weak transcription Primary T helper cells fromperipheralblood blood
48 chr5:154204000-154207800 Weak transcription HUES6 Cell Line embryonic stem cell
49 chr5:154204000-154207800 Weak transcription Muscle Satellite Cultured Cells --
50 chr5:154204000-154208000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin

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Last update: Aug 31, 2015