Variant report

Variant	rs2544887
Chromosome Location	chr5:154347773-154347774
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154236951..154238944-chr5:154345833..154349110,3	MCF-7	breast:
2	chr5:154347106..154348977-chr5:154351843..154353596,2	MCF-7	breast:
3	chr5:154342000..154345250-chr5:154346858..154348980,3	MCF-7	breast:
4	chr5:154345809..154348149-chr5:154351585..154354397,2	K562	blood:
5	chr5:154346758..154347900-chr5:154407299..154408191,5	MCF-7	breast:
6	chr5:154346229..154348677-chr5:154350514..154352609,2	K562	blood:

Variant related genes	Relation type
ENSG00000170271	Chromatin interaction
ENSG00000155508	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10042134	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13181649	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs164192	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs164193	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs164194	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs164196	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs164197	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs164198	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164199	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs180903	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs184703	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs185323	0.90[EUR][1000 genomes]
rs186998	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs189439	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2059045	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2112219	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2112222	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2544827	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2544862	0.90[EUR][1000 genomes]
rs2544871	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544872	0.90[EUR][1000 genomes]
rs2544873	0.90[EUR][1000 genomes]
rs2544877	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2544881	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2544882	0.90[EUR][1000 genomes]
rs2544883	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544885	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255530	0.90[EUR][1000 genomes]
rs2560069	0.90[EUR][1000 genomes]
rs2644747	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2644748	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688183	0.81[EUR][1000 genomes]
rs2688185	0.90[EUR][1000 genomes]
rs2688192	0.90[EUR][1000 genomes]
rs2688202	0.90[EUR][1000 genomes]
rs32426	0.90[EUR][1000 genomes]
rs346572	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs346573	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs348734	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs348736	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs348737	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs348738	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs348746	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs348753	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs348755	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs348758	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs40584	0.90[EUR][1000 genomes]
rs4958393	0.90[EUR][1000 genomes]
rs4958769	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4958770	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4958772	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958774	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59025588	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61511229	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6580117	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6580118	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6580119	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6580121	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6879093	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs702743	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73278805	0.90[EUR][1000 genomes]
rs73278819	0.90[EUR][1000 genomes]
rs73278843	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73280717	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73280724	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280726	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73280747	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73280749	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73280750	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7720538	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7733367	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs816715	0.90[EUR][1000 genomes]
rs816724	0.84[EUR][1000 genomes]
rs816733	0.90[EUR][1000 genomes]
rs816736	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs816737	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs816738	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs816739	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs816740	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs816742	0.90[EUR][1000 genomes]
rs816744	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs816745	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs816746	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs816748	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs863650	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154321800-154352200	Weak transcription	Right Ventricle	heart
2	chr5:154322000-154350000	Weak transcription	Fetal Brain Male	brain
3	chr5:154322400-154349600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:154322600-154364600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:154327600-154351600	Weak transcription	Fetal Heart	heart
6	chr5:154335600-154350600	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr5:154335800-154348000	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr5:154335800-154348400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr5:154335800-154349000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:154336000-154349000	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr5:154336000-154349400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr5:154336200-154348800	Strong transcription	Fetal Intestine Large	intestine
13	chr5:154336200-154349000	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr5:154336200-154349400	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr5:154336600-154348800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:154336800-154350600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:154337600-154348000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr5:154338400-154351800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr5:154339000-154347800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr5:154339200-154350400	Weak transcription	Esophagus	oesophagus
21	chr5:154339200-154355400	Weak transcription	Gastric	stomach
22	chr5:154339200-154361200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr5:154339400-154350400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:154339400-154355400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr5:154339400-154355400	Weak transcription	Pancreas	Pancrea
26	chr5:154339400-154355600	Weak transcription	Lung	lung
27	chr5:154339600-154349800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr5:154339600-154356200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr5:154340200-154357200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr5:154341400-154366600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr5:154341600-154348200	Weak transcription	Left Ventricle	heart
32	chr5:154341600-154349600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr5:154342000-154348000	Weak transcription	Fetal Kidney	kidney
34	chr5:154342200-154347800	Weak transcription	NHEK	skin
35	chr5:154342400-154349400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr5:154342600-154348000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr5:154342800-154363400	Weak transcription	Brain Germinal Matrix	brain
38	chr5:154343000-154348800	Strong transcription	Primary T cells from cord blood	blood
39	chr5:154343400-154356800	Weak transcription	Hela-S3	cervix
40	chr5:154343600-154349400	Strong transcription	Fetal Muscle Leg	muscle
41	chr5:154344200-154348800	Strong transcription	Fetal Lung	lung
42	chr5:154344800-154356400	Weak transcription	HMEC	breast
43	chr5:154345000-154347800	Strong transcription	GM12878-XiMat	blood
44	chr5:154345000-154348800	Strong transcription	Fetal Muscle Trunk	muscle
45	chr5:154345000-154357000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr5:154345200-154348000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr5:154345200-154348800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr5:154345200-154348800	Strong transcription	Fetal Thymus	thymus
49	chr5:154345200-154349000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr5:154345400-154348000	Strong transcription	Dnd41	blood

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