Variant report

Variant	rs73280724
Chromosome Location	chr5:154342078-154342079
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154342000..154345250-chr5:154346858..154348980,3	MCF-7	breast:
2	chr5:154341896..154343442-chr5:154349027..154351192,2	K562	blood:

Extended variants
information (count: 150 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:150)

rs_ID	r²[population]
rs10042134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13181649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1390598	0.85[EUR][1000 genomes]
rs1390600	0.85[EUR][1000 genomes]
rs1390601	0.85[EUR][1000 genomes]
rs1390602	0.85[EUR][1000 genomes]
rs1390603	0.85[EUR][1000 genomes]
rs164192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs164193	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs164194	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs164196	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs164197	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116671	0.86[EUR][1000 genomes]
rs17116677	0.85[EUR][1000 genomes]
rs17116679	0.85[EUR][1000 genomes]
rs17116683	0.85[EUR][1000 genomes]
rs17116701	0.85[EUR][1000 genomes]
rs17570361	0.85[EUR][1000 genomes]
rs180903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs184703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs185323	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs186998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs189439	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2059045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2112219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2112222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544827	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2544862	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544870	0.90[EUR][1000 genomes]
rs2544871	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544872	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544873	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544881	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544882	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544883	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544885	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544887	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255530	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2560069	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2644747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2644748	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688183	0.91[EUR][1000 genomes]
rs2688185	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688192	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688202	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs32426	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs346572	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs346573	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348734	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs348758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs39615	0.90[EUR][1000 genomes]
rs39953	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs40584	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4958393	1.00[EUR][1000 genomes]
rs4958769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4958770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4958772	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958774	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58395756	0.85[EUR][1000 genomes]
rs59025588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59919514	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60476447	0.81[EUR][1000 genomes]
rs60906140	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61511229	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61554631	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6580117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580118	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6580119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580124	0.85[EUR][1000 genomes]
rs6879093	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs702743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276745	0.81[EUR][1000 genomes]
rs73276760	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73276766	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73276769	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73276780	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73278805	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73278819	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73278843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73280747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280761	0.90[EUR][1000 genomes]
rs73280762	0.90[EUR][1000 genomes]
rs73280768	0.90[EUR][1000 genomes]
rs73280770	0.85[EUR][1000 genomes]
rs73280778	0.85[EUR][1000 genomes]
rs73280785	0.85[EUR][1000 genomes]
rs73280786	0.85[EUR][1000 genomes]
rs73280788	0.85[EUR][1000 genomes]
rs73280792	0.85[EUR][1000 genomes]
rs73280795	0.85[EUR][1000 genomes]
rs73280797	0.81[EUR][1000 genomes]
rs73280799	0.85[EUR][1000 genomes]
rs73282508	0.85[EUR][1000 genomes]
rs73282513	0.85[EUR][1000 genomes]
rs73282516	0.85[EUR][1000 genomes]
rs73282519	0.85[EUR][1000 genomes]
rs73282521	0.85[EUR][1000 genomes]
rs73282523	0.85[EUR][1000 genomes]
rs73282525	0.85[EUR][1000 genomes]
rs73282527	0.85[EUR][1000 genomes]
rs73282528	0.85[EUR][1000 genomes]
rs73282533	0.85[EUR][1000 genomes]
rs73282538	0.85[EUR][1000 genomes]
rs73282539	0.85[EUR][1000 genomes]
rs73282553	0.85[EUR][1000 genomes]
rs73282555	0.85[EUR][1000 genomes]
rs73282558	0.85[EUR][1000 genomes]
rs7703040	0.85[EUR][1000 genomes]
rs7703227	0.85[EUR][1000 genomes]
rs7703386	0.85[EUR][1000 genomes]
rs7703765	0.85[EUR][1000 genomes]
rs7719208	0.85[EUR][1000 genomes]
rs7720538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7722949	0.85[EUR][1000 genomes]
rs7723741	0.85[EUR][1000 genomes]
rs7724303	0.85[EUR][1000 genomes]
rs7724660	0.85[EUR][1000 genomes]
rs7727176	0.81[EUR][1000 genomes]
rs7733367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816715	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816716	0.90[EUR][1000 genomes]
rs816724	0.95[EUR][1000 genomes]
rs816725	0.85[EUR][1000 genomes]
rs816733	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816737	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs816738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816739	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816740	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816741	0.81[AMR][1000 genomes]
rs816742	1.00[EUR][1000 genomes]
rs816744	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816748	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs863650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154321400-154346000	Weak transcription	Colonic Mucosa	Colon
2	chr5:154321600-154343400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:154321600-154345600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:154321800-154352200	Weak transcription	Right Ventricle	heart
5	chr5:154322000-154350000	Weak transcription	Fetal Brain Male	brain
6	chr5:154322400-154349600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:154322600-154364600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr5:154322800-154346000	Weak transcription	Colon Smooth Muscle	Colon
9	chr5:154327600-154351600	Weak transcription	Fetal Heart	heart
10	chr5:154329600-154345800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr5:154329800-154347200	Weak transcription	Psoas Muscle	Psoas
12	chr5:154330600-154345800	Weak transcription	Small Intestine	intestine
13	chr5:154331000-154346200	Weak transcription	K562	blood
14	chr5:154334800-154347200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr5:154335200-154342200	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr5:154335400-154342400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:154335400-154344400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:154335600-154350600	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr5:154335800-154342400	Strong transcription	Primary B cells from peripheral blood	blood
20	chr5:154335800-154343600	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr5:154335800-154344400	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr5:154335800-154348000	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr5:154335800-154348400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr5:154335800-154349000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr5:154336000-154342200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr5:154336000-154349000	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr5:154336000-154349400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr5:154336200-154343800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr5:154336200-154348800	Strong transcription	Fetal Intestine Large	intestine
30	chr5:154336200-154349000	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr5:154336200-154349400	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr5:154336400-154342400	Strong transcription	Liver	Liver
33	chr5:154336400-154342400	Strong transcription	Fetal Thymus	thymus
34	chr5:154336400-154343000	Strong transcription	Dnd41	blood
35	chr5:154336600-154342600	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr5:154336600-154342800	Strong transcription	Brain Germinal Matrix	brain
37	chr5:154336600-154343400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr5:154336600-154348800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr5:154336800-154345800	Weak transcription	Spleen	Spleen
40	chr5:154336800-154350600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr5:154337400-154342400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr5:154337600-154342400	Strong transcription	A549	lung
43	chr5:154337600-154348000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr5:154337800-154342400	Strong transcription	Stomach Smooth Muscle	stomach
45	chr5:154337800-154342600	Strong transcription	Duodenum Mucosa	Duodenum
46	chr5:154338000-154344200	Strong transcription	Fetal Muscle Trunk	muscle
47	chr5:154338400-154342200	Strong transcription	HepG2	liver
48	chr5:154338400-154342600	Strong transcription	Primary T cells from cord blood	blood
49	chr5:154338400-154342600	Strong transcription	Placenta	Placenta
50	chr5:154338400-154351800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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