The 2.0 version of rSNPBase

Variant report

Variant rs255530
Chromosome Location chr5:154213519-154213520
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:154195600-154214400 Weak transcription Small Intestine intestine
2 chr5:154196000-154229200 Weak transcription Psoas Muscle Psoas
3 chr5:154196400-154214000 Weak transcription Pancreatic Islets Pancreatic Islet
4 chr5:154197600-154214400 Weak transcription HUVEC blood vessel
5 chr5:154197800-154214400 Weak transcription Hela-S3 cervix
6 chr5:154199400-154214400 Weak transcription Right Atrium heart
7 chr5:154200200-154214400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr5:154200800-154214000 Weak transcription Fetal Heart heart
9 chr5:154201000-154228000 Weak transcription Fetal Brain Male brain
10 chr5:154203400-154229000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
11 chr5:154203600-154214400 Weak transcription iPS-15b Cell Line embryonic stem cell
12 chr5:154204200-154214400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
13 chr5:154204400-154213800 Weak transcription Primary monocytes fromperipheralblood blood
14 chr5:154204400-154213800 Weak transcription NHDF-Ad bronchial
15 chr5:154204400-154214400 Weak transcription Brain Germinal Matrix brain
16 chr5:154209400-154214000 Weak transcription Primary hematopoietic stem cells blood
17 chr5:154209400-154214400 Weak transcription ES-I3 Cell Line embryonic stem cell
18 chr5:154209800-154214000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr5:154210000-154213800 Weak transcription Primary B cells from peripheral blood blood
20 chr5:154210000-154214200 Weak transcription Placenta Placenta
21 chr5:154210000-154214200 Weak transcription Stomach Mucosa stomach
22 chr5:154210000-154214200 Weak transcription NH-A brain
23 chr5:154210000-154214400 Weak transcription Colonic Mucosa Colon
24 chr5:154210200-154214600 Weak transcription Placenta Amnion Placenta Amnion
25 chr5:154210200-154229000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr5:154210400-154213800 Weak transcription Primary T regulatory cells fromperipheralblood blood
27 chr5:154210400-154214000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
28 chr5:154210400-154214400 Weak transcription Sigmoid Colon Sigmoid Colon
29 chr5:154210600-154213600 Weak transcription Primary T cells from cord blood blood
30 chr5:154210600-154213800 Weak transcription Primary T cells fromperipheralblood blood
31 chr5:154210600-154213800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
32 chr5:154210600-154213800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
33 chr5:154210600-154214000 Weak transcription GM12878-XiMat blood
34 chr5:154210600-154214200 Weak transcription Primary T helper naive cells from peripheral blood blood
35 chr5:154210600-154214200 Weak transcription Lung lung
36 chr5:154210600-154214200 Weak transcription Ovary ovary
37 chr5:154210600-154214200 Weak transcription Rectal Mucosa Donor 31 rectum
38 chr5:154210600-154214200 Weak transcription Rectal Smooth Muscle rectum
39 chr5:154210600-154214400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
40 chr5:154210600-154215000 Strong transcription Breast Myoepithelial Primary Cells Breast
41 chr5:154210800-154213600 Weak transcription Primary T helper naive cells fromperipheralblood blood
42 chr5:154210800-154214200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
43 chr5:154210800-154214200 Weak transcription HSMMtube muscle
44 chr5:154210800-154214400 Weak transcription Cortex derived primary cultured neurospheres brain
45 chr5:154210800-154214400 Weak transcription Brain Inferior Temporal Lobe brain
46 chr5:154210800-154229000 Weak transcription Fetal Kidney kidney
47 chr5:154210800-154229800 Weak transcription Fetal Thymus thymus
48 chr5:154211000-154213800 Weak transcription Primary hematopoietic stem cells short term culture blood
49 chr5:154211000-154213800 Weak transcription Primary T killer memory cells from peripheral blood blood
50 chr5:154211000-154214000 Weak transcription Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015