The 2.0 version of rSNPBase

Variant report

Variant rs164193
Chromosome Location chr5:154355395-154355396
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:154322600-154364600 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr5:154339200-154355400 Weak transcription Gastric stomach
3 chr5:154339200-154361200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr5:154339400-154355400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr5:154339400-154355400 Weak transcription Pancreas Pancrea
6 chr5:154339400-154355600 Weak transcription Lung lung
7 chr5:154339600-154356200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
8 chr5:154340200-154357200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
9 chr5:154341400-154366600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr5:154342800-154363400 Weak transcription Brain Germinal Matrix brain
11 chr5:154343400-154356800 Weak transcription Hela-S3 cervix
12 chr5:154344800-154356400 Weak transcription HMEC breast
13 chr5:154345000-154357000 Weak transcription ES-WA7 Cell Line embryonic stem cell
14 chr5:154346000-154356800 Weak transcription Skeletal Muscle Male skeletal muscle
15 chr5:154346400-154355400 Weak transcription Fetal Stomach stomach
16 chr5:154346400-154357200 Weak transcription Aorta Aorta
17 chr5:154346800-154357000 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr5:154348400-154356800 Weak transcription Left Ventricle heart
19 chr5:154348400-154357400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
20 chr5:154348600-154355400 Weak transcription Primary B cells from peripheral blood blood
21 chr5:154348600-154355600 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr5:154348600-154355800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
23 chr5:154348600-154360200 Weak transcription Fetal Brain Female brain
24 chr5:154348800-154355400 Weak transcription Thymus Thymus
25 chr5:154348800-154355600 Weak transcription Skeletal Muscle Female skeletal muscle
26 chr5:154348800-154356600 Weak transcription Primary T helper naive cells fromperipheralblood blood
27 chr5:154348800-154356600 Weak transcription Brain Anterior Caudate brain
28 chr5:154348800-154357000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
29 chr5:154348800-154357000 Weak transcription Muscle Satellite Cultured Cells --
30 chr5:154348800-154357400 Weak transcription Primary T cells from cord blood blood
31 chr5:154348800-154357400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
32 chr5:154349000-154356200 Weak transcription HSMM muscle
33 chr5:154349000-154357000 Weak transcription Monocytes-CD14+_RO01746 blood
34 chr5:154349200-154357000 Weak transcription K562 blood
35 chr5:154349400-154355400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
36 chr5:154349400-154357000 Weak transcription Fetal Muscle Leg muscle
37 chr5:154349600-154357200 Weak transcription A549 lung
38 chr5:154350600-154357000 Weak transcription Primary T helper cells fromperipheralblood blood
39 chr5:154350600-154357400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr5:154350800-154357200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr5:154350800-154358600 Weak transcription Fetal Adrenal Gland Adrenal Gland
42 chr5:154352000-154355800 Weak transcription Brain Cingulate Gyrus brain
43 chr5:154354200-154355800 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
44 chr5:154354400-154355800 Strong transcription Brain Inferior Temporal Lobe brain
45 chr5:154354800-154355400 Weak transcription Primary monocytes fromperipheralblood blood
46 chr5:154354800-154356200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
47 chr5:154355200-154355600 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015