Variant report

Variant	rs17116671
Chromosome Location	chr5:154372587-154372588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr5:154372567-154372647	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
ENSG00000253261	TF binding region

Extended variants
information (count: 151 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:150)

rs_ID	r²[population]
rs10042134	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs13181649	0.86[EUR][1000 genomes]
rs1390598	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1390600	0.90[EUR][1000 genomes]
rs1390601	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1390602	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1390603	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs164192	0.86[EUR][1000 genomes]
rs164193	0.86[EUR][1000 genomes]
rs164194	0.86[EUR][1000 genomes]
rs164196	0.86[EUR][1000 genomes]
rs164198	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs164199	0.86[EUR][1000 genomes]
rs17116677	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17116679	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17116683	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17116698	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17116701	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17570361	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs180903	0.86[EUR][1000 genomes]
rs184703	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs185323	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs186998	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs189439	0.86[EUR][1000 genomes]
rs2059045	0.86[EUR][1000 genomes]
rs2112219	0.86[EUR][1000 genomes]
rs2112220	1.00[CEU][hapmap]
rs2112222	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2544827	0.86[EUR][1000 genomes]
rs2544862	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2544870	1.00[CEU][hapmap]
rs2544871	0.86[EUR][1000 genomes]
rs2544872	0.86[EUR][1000 genomes]
rs2544873	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2544877	0.86[EUR][1000 genomes]
rs2544881	0.86[EUR][1000 genomes]
rs2544882	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2544883	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2544885	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs255530	0.86[EUR][1000 genomes]
rs2560069	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2644747	1.00[CEU][hapmap]
rs2644748	0.86[EUR][1000 genomes]
rs2688185	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2688192	0.86[EUR][1000 genomes]
rs2688202	0.86[EUR][1000 genomes]
rs32426	0.86[EUR][1000 genomes]
rs346572	0.86[EUR][1000 genomes]
rs346573	0.86[EUR][1000 genomes]
rs348734	0.86[EUR][1000 genomes]
rs348736	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs348737	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs348738	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs348740	1.00[CEU][hapmap]
rs348746	0.86[EUR][1000 genomes]
rs348753	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs348755	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs348758	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs39615	0.95[EUR][1000 genomes]
rs39953	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs40584	0.86[EUR][1000 genomes]
rs4958393	0.86[EUR][1000 genomes]
rs4958769	0.86[EUR][1000 genomes]
rs4958770	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4958772	0.81[EUR][1000 genomes]
rs4958774	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs58395756	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59025588	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59919514	0.86[EUR][1000 genomes]
rs60476447	0.86[EUR][1000 genomes]
rs60906140	0.86[EUR][1000 genomes]
rs61386671	0.81[EUR][1000 genomes]
rs61554631	0.86[EUR][1000 genomes]
rs6580117	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6580119	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6580121	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6580124	0.90[EUR][1000 genomes]
rs6879093	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs702743	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs73276745	0.86[EUR][1000 genomes]
rs73276760	0.86[EUR][1000 genomes]
rs73276766	0.86[EUR][1000 genomes]
rs73276769	0.86[EUR][1000 genomes]
rs73276780	0.86[EUR][1000 genomes]
rs73278805	0.86[EUR][1000 genomes]
rs73278819	0.86[EUR][1000 genomes]
rs73278843	0.86[EUR][1000 genomes]
rs73280717	0.86[EUR][1000 genomes]
rs73280724	0.86[EUR][1000 genomes]
rs73280726	0.86[EUR][1000 genomes]
rs73280747	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73280749	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73280750	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73280761	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280762	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73280770	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73280778	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73280785	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73280786	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73280788	0.90[EUR][1000 genomes]
rs73280792	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73280795	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73280797	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73280799	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282508	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282513	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282516	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282519	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282521	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282522	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73282523	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282525	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282527	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282528	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282530	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73282533	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282538	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282539	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282553	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282555	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73282558	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7703040	0.90[EUR][1000 genomes]
rs7703227	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7703386	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7703765	0.90[EUR][1000 genomes]
rs7719208	0.90[EUR][1000 genomes]
rs7720538	0.86[EUR][1000 genomes]
rs7722783	0.89[AMR][1000 genomes]
rs7722922	0.89[AMR][1000 genomes]
rs7722949	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7723741	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7724303	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7724660	0.90[EUR][1000 genomes]
rs7727176	0.86[EUR][1000 genomes]
rs7733367	0.86[EUR][1000 genomes]
rs816715	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs816716	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs816724	0.81[EUR][1000 genomes]
rs816733	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs816736	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs816738	0.86[EUR][1000 genomes]
rs816739	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs816740	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs816742	0.86[EUR][1000 genomes]
rs816744	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs816745	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs816746	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs816748	1.00[CEU][hapmap]
rs863650	1.00[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv968117	chr5:154371654-154381973	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154370200-154375400	Weak transcription	HUVEC	blood vessel
2	chr5:154372400-154373200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:154372400-154373200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr5:154372400-154373200	Enhancers	Dnd41	blood

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