Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF3	chr11:16430210-16430629	K562	blood:	n/a	n/a
2	CEBPB	chr11:16430372-16430638	K562	blood:	n/a	n/a
3	RFX5	chr11:16430443-16430639	K562	blood:	n/a	n/a
4	TBL1XR1	chr11:16430346-16430582	K562	blood:	n/a	n/a
5	NFYB	chr11:16430346-16430656	K562	blood:	n/a	chr11:16430471-16430481
6	RCOR1	chr11:16430151-16430593	K562	blood:	n/a	n/a
7	CUX1	chr11:16430327-16430766	K562	blood:	n/a	chr11:16430624-16430638 chr11:16430625-16430641
8	JUN	chr11:16430301-16430685	K562	blood:	n/a	chr11:16430448-16430457
9	TAL1	chr11:16430204-16430562	K562	blood:	n/a	n/a
10	ATF1	chr11:16430309-16430617	K562	blood:	n/a	n/a
11	JUND	chr11:16430313-16430572	HepG2	liver:	n/a	chr11:16430448-16430457
12	JUND	chr11:16430058-16430649	K562	blood:	n/a	chr11:16430448-16430457
13	EP300	chr11:16430223-16430580	K562	blood:	n/a	n/a
14	TEAD4	chr11:16430145-16430651	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16428545..16430895-chr11:16628105..16630228,2	K562	blood:

Variant related genes	Relation type
SOX6	TF binding region
ENSG00000110693	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1503442	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16933090	1.00[ASN][1000 genomes]
rs58769283	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61469208	0.81[ASN][1000 genomes]
rs73429701	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431671	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431673	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431677	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431679	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431686	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431697	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433503	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433517	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433521	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433526	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433528	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433538	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433558	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433560	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7925853	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7938702	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv832075	chr11:16391700-16490934	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16417200-16434200	Weak transcription	Psoas Muscle	Psoas
2	chr11:16427400-16435400	Weak transcription	Brain Germinal Matrix	brain
3	chr11:16427400-16438800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:16427600-16440000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:16428000-16438600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:16428400-16434200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:16428600-16430800	Enhancers	K562	blood
8	chr11:16429400-16439200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:16430000-16432600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:16430200-16431600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:16430400-16440000	Weak transcription	Left Ventricle	heart

Quick Search: