Variant report

Variant	rs61469208
Chromosome Location	chr11:16450093-16450094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16933090	0.81[ASN][1000 genomes]
rs58769283	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs61404451	0.81[ASN][1000 genomes]
rs73429696	0.83[AFR][1000 genomes]
rs73429701	0.81[ASN][1000 genomes]
rs73431671	0.93[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73431673	0.81[ASN][1000 genomes]
rs73431677	0.81[ASN][1000 genomes]
rs73431679	0.95[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73431686	0.81[ASN][1000 genomes]
rs73431697	0.81[ASN][1000 genomes]
rs73433503	0.81[ASN][1000 genomes]
rs73433517	0.81[ASN][1000 genomes]
rs73433521	0.81[ASN][1000 genomes]
rs73433526	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73433528	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73433538	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73433558	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73433560	0.97[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7925853	0.81[ASN][1000 genomes]
rs7938702	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv832075	chr11:16391700-16490934	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16443800-16450800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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