Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16460793..16462936-chr11:16464207..16467731,4	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1503442	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16933090	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58769283	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61404451	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61469208	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73429701	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431671	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431673	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431677	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431679	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431686	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431697	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433503	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433517	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433521	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433526	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433528	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433538	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433560	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7925853	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7938702	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv832075	chr11:16391700-16490934	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16461000-16461800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:16461200-16462000	Enhancers	Brain Germinal Matrix	brain
3	chr11:16461200-16462600	Weak transcription	Psoas Muscle	Psoas
4	chr11:16461400-16461800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr11:16461400-16461800	Enhancers	Fetal Heart	heart
6	chr11:16461400-16462000	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr11:16461400-16462400	Enhancers	Fetal Brain Female	brain
8	chr11:16461400-16462800	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr11:16461600-16491200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:16461600-16510000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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