Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16422959..16425207-chr11:16427546..16429356,2	MCF-7	breast:
2	chr11:16415811..16418306-chr11:16427496..16429651,2	K562	blood:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1503442	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16933090	1.00[ASN][1000 genomes]
rs58769283	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61404451	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61469208	0.81[ASN][1000 genomes]
rs73429701	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431671	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431673	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431677	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431679	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431686	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433503	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433521	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433526	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433528	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433538	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433558	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433560	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7925853	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7938702	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv832075	chr11:16391700-16490934	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16417200-16434200	Weak transcription	Psoas Muscle	Psoas
2	chr11:16423800-16428200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr11:16426800-16428200	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr11:16427200-16429600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:16427400-16435400	Weak transcription	Brain Germinal Matrix	brain
6	chr11:16427400-16438800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:16427600-16440000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:16428000-16428200	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr11:16428000-16428200	Enhancers	K562	blood
10	chr11:16428000-16438600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search: