Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16419460..16421100-chr11:16436928..16438433,2	K562	blood:
2	chr11:16419446..16421077-chr11:16594061..16596211,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1503442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16933090	1.00[ASN][1000 genomes]
rs58769283	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61404451	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61469208	0.81[ASN][1000 genomes]
rs73429701	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431671	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431679	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431697	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433517	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433526	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433528	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433538	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433558	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433560	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7925853	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7938702	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv832075	chr11:16391700-16490934	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16415400-16424400	Weak transcription	Fetal Heart	heart
2	chr11:16417200-16434200	Weak transcription	Psoas Muscle	Psoas
3	chr11:16418000-16425200	Weak transcription	Brain Germinal Matrix	brain
4	chr11:16418800-16419800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr11:16418800-16420200	Enhancers	HepG2	liver
6	chr11:16419200-16419800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr11:16419200-16420400	Enhancers	Fetal Intestine Large	intestine
8	chr11:16419200-16420400	Enhancers	Fetal Intestine Small	intestine
9	chr11:16419400-16420200	Enhancers	Small Intestine	intestine
10	chr11:16419600-16423600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:16419600-16424000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:16419600-16424000	Weak transcription	Brain Anterior Caudate	brain
13	chr11:16419600-16425000	Weak transcription	Duodenum Mucosa	Duodenum

Quick Search: