Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFF	chr11:16406683-16407015	HepG2	liver:	n/a	chr11:16406837-16406851 chr11:16406831-16406849
2	MAFK	chr11:16406678-16406998	HepG2	liver:	n/a	chr11:16406840-16406850 chr11:16406837-16406851 chr11:16406834-16406854 chr11:16406833-16406848 chr11:16406836-16406852
3	MAFF	chr11:16406664-16406991	K562	blood:	n/a	chr11:16406837-16406851 chr11:16406831-16406849
4	MAFK	chr11:16406670-16407002	IMR90	lung:	n/a	chr11:16406840-16406850 chr11:16406837-16406851 chr11:16406834-16406854 chr11:16406833-16406848 chr11:16406836-16406852
5	MAFK	chr11:16406716-16406977	K562	blood:	n/a	chr11:16406840-16406850 chr11:16406837-16406851 chr11:16406834-16406854 chr11:16406833-16406848 chr11:16406836-16406852
6	MAFK	chr11:16406693-16406930	HepG2	liver:	n/a	chr11:16406840-16406850 chr11:16406837-16406851 chr11:16406834-16406854 chr11:16406833-16406848 chr11:16406836-16406852

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16378118..16380186-chr11:16404618..16407348,2	K562	blood:
2	chr11:16389241..16392002-chr11:16405954..16407703,2	K562	blood:

Variant related genes	Relation type
SOX6	TF binding region

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1503442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16933090	1.00[ASN][1000 genomes]
rs58769283	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61404451	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61469208	0.81[ASN][1000 genomes]
rs73429701	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431671	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431679	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73431697	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433517	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433526	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433528	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433538	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433558	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433560	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7925853	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7938702	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv832075	chr11:16391700-16490934	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16388200-16414200	Weak transcription	Fetal Intestine Small	intestine
2	chr11:16405600-16407400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:16406600-16408000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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